SCOPe 2.07: Species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]

Lineage for Species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
unusual fold
Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families)
automatically mapped to Pfam PF03717
Family d.175.1.1: Penicillin binding protein dimerisation domain [56520] (2 proteins)
contains an insert subdomain of ClpS-like fold
Protein Penicillin-binding protein 2x (pbp-2x), N-terminal domain [56521] (1 species)
the insert subdomain (residues 93-183) is usually disordered in the structures
Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [56522] (6 PDB entries)

PDB entries in Species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]:

Domain(s) for 1k25:
1. Domain d1k25a3: 1k25 A:67-263 [68035]
  Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
2. Domain d1k25b3: 1k25 B:1066-1263 [68039]
  Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
3. Domain d1k25c3: 1k25 C:2067-2263 [68043]
  Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
4. Domain d1k25d3: 1k25 D:3066-3263 [68047]
  Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
Domain(s) for 1pmd:
- Domain d1pmda3: 1pmd A:76-263 [42562]
  Other proteins in same PDB: d1pmda1, d1pmda2, d1pmda4
  CA-atoms only
Domain(s) for 1pyy:
- Domain d1pyya3: 1pyy A:73-263 [95387]
  Other proteins in same PDB: d1pyya1, d1pyya2, d1pyya4
  complexed with mpd, osu, so4; mutant
Domain(s) for 1qme:
- Domain d1qmea3: 1qme A:71-263 [42560]
  Other proteins in same PDB: d1qmea1, d1qmea2, d1qmea4
  complexed with so4
Domain(s) for 1qmf:
- Domain d1qmfa3: 1qmf A:71-263 [42561]
  Other proteins in same PDB: d1qmfa1, d1qmfa2, d1qmfa4
  complexed with ces, kef
Domain(s) for 1rp5:
1. Domain d1rp5a3: 1rp5 A:64-263 [97696]
  Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a4, d1rp5b1, d1rp5b2, d1rp5b4
  the insert subdomain is fully ordered
  complexed with so4
2. Domain d1rp5b3: 1rp5 B:64-263 [97700]
  Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a4, d1rp5b1, d1rp5b2, d1rp5b4
  the insert subdomain is fully ordered
  complexed with so4

More info for Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain

Timeline for Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain:

Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain first appeared (with stable ids) in SCOP 1.55, called Species Streptococcus pneumoniae [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain
Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain appears in SCOPe 2.06
Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain appears in the current release, SCOPe 2.08