Lineage for Species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3004489Fold d.175: Penicillin binding protein dimerisation domain [56518] (1 superfamily)
    unusual fold
  4. 3004490Superfamily d.175.1: Penicillin binding protein dimerisation domain [56519] (2 families) (S)
    automatically mapped to Pfam PF03717
  5. 3004491Family d.175.1.1: Penicillin binding protein dimerisation domain [56520] (2 proteins)
    contains an insert subdomain of ClpS-like fold
  6. 3004514Protein Penicillin-binding protein 2x (pbp-2x), N-terminal domain [56521] (1 species)
    the insert subdomain (residues 93-183) is usually disordered in the structures
  7. 3004515Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [56522] (6 PDB entries)

PDB entries in Species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]:

  1. Domain(s) for 1k25:
    1. 3004522Domain d1k25a3: 1k25 A:67-263 [68035]
      Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
      has additional subdomain(s) that are not in the common domain
    2. 3004523Domain d1k25b3: 1k25 B:1066-1263 [68039]
      Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
      has additional subdomain(s) that are not in the common domain
    3. 3004524Domain d1k25c3: 1k25 C:2067-2263 [68043]
      Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
      has additional subdomain(s) that are not in the common domain
    4. 3004525Domain d1k25d3: 1k25 D:3066-3263 [68047]
      Other proteins in same PDB: d1k25a1, d1k25a2, d1k25a4, d1k25b1, d1k25b2, d1k25b4, d1k25c1, d1k25c2, d1k25c4, d1k25d1, d1k25d2, d1k25d4
      has additional subdomain(s) that are not in the common domain
  2. Domain(s) for 1pmd:
  3. Domain(s) for 1pyy:
  4. Domain(s) for 1qme:
    • 3004517Domain d1qmea3: 1qme A:71-263 [42560]
      Other proteins in same PDB: d1qmea1, d1qmea2, d1qmea4
      complexed with so4
      fragment; missing more than one-third of the common structure and/or sequence
      has additional subdomain(s) that are not in the common domain
  5. Domain(s) for 1qmf:
    • 3004520Domain d1qmfa3: 1qmf A:71-263 [42561]
      Other proteins in same PDB: d1qmfa1, d1qmfa2, d1qmfa4
      complexed with ces, kef
      fragment; missing more than one-third of the common structure and/or sequence
      has additional subdomain(s) that are not in the common domain
  6. Domain(s) for 1rp5:
    1. 3004518Domain d1rp5a3: 1rp5 A:64-263 [97696]
      Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a4, d1rp5b1, d1rp5b2, d1rp5b4
      the insert subdomain is fully ordered
      complexed with so4

      has additional subdomain(s) that are not in the common domain
    2. 3004519Domain d1rp5b3: 1rp5 B:64-263 [97700]
      Other proteins in same PDB: d1rp5a1, d1rp5a2, d1rp5a4, d1rp5b1, d1rp5b2, d1rp5b4
      the insert subdomain is fully ordered
      complexed with so4

      has additional subdomain(s) that are not in the common domain

More info for Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain

Timeline for Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain:

  • Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain first appeared (with stable ids) in SCOP 1.55, called Species Streptococcus pneumoniae [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain
  • Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] from d.175.1.1 Penicillin-binding protein 2x (pbp-2x), N-terminal domain appears in SCOPe 2.07