Lineage for Protein: Adenylation domain of NAD+-dependent DNA ligase

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217840Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families) (S)
    has a circularly permuted topology
  5. 2217856Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins)
    automatically mapped to Pfam PF01653
  6. 2217857Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species)
    contains additional, N-terminal all-alpha subdomain

Species:

  1. 2217858Bacillus stearothermophilus [TaxId:1422] [56098] (1 PDB entry)
  2. 2217861Enterococcus faecalis [TaxId:1351] [118124] (9 PDB entries)
    Uniprot Q837V6 5-317
    1. Domain for 1ta8:
    2. Domains for 1tae:
      1. 2217870Domain d1taea_: 1tae A: [112376]
        complexed with na, nad, so4
      2. 2217871Domain d1taeb_: 1tae B: [112377]
        complexed with na, nad, so4
      3. 2217872Domain d1taec_: 1tae C: [112378]
        complexed with na, nad, so4
      4. 2217873Domain d1taed_: 1tae D: [112379]
        complexed with na, nad, so4
    3. Domain for 3ba8:
    4. Domain for 3ba9:
    5. Domain for 3baa:
    6. Domain for 3bab:
    7. Domain for 4eeq:
    8. Domain for 4lh6:
    9. Domain for 4lh7:
  3. 2217874Staphylococcus aureus [TaxId:1280] [189155] (2 PDB entries)
    1. Domains for 3jsl:
      1. 2217875Domain d3jsla_: 3jsl A: [178787]
        automated match to d1b04a_
        complexed with so4
      2. 2217876Domain d3jslb_: 3jsl B: [178788]
        automated match to d1b04a_
        complexed with so4
    2. Domain for 3jsn:
  4. 2217878Thermus filiformis [TaxId:276] [56099] (3 PDB entries)
    1. Domains for 1dgs:
      1. 2217879Domain d1dgsa3: 1dgs A:1-314 [41581]
        Other proteins in same PDB: d1dgsa1, d1dgsa2, d1dgsb1, d1dgsb2
        protein/DNA complex; complexed with amp, zn
      2. 2217880Domain d1dgsb3: 1dgs B:2001-2314 [41582]
        Other proteins in same PDB: d1dgsa1, d1dgsa2, d1dgsb1, d1dgsb2
        protein/DNA complex; complexed with amp, zn
    2. Domain for 1dgt:
    3. Domains for 1v9p:
      1. 2217881Domain d1v9pa3: 1v9p A:1-317 [100546]
        Other proteins in same PDB: d1v9pa1, d1v9pa2, d1v9pb1, d1v9pb2
        complexed with amp, zn
      2. 2217882Domain d1v9pb3: 1v9p B:2001-2317 [100549]
        Other proteins in same PDB: d1v9pa1, d1v9pa2, d1v9pb1, d1v9pb2
        complexed with amp, zn

More info for Protein Adenylation domain of NAD+-dependent DNA ligase from d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase

Timeline for Protein Adenylation domain of NAD+-dependent DNA ligase from d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase: