Lineage for Class d: Alpha and beta proteins (a+b)

  1. Root: SCOP 1.59
  2. 128814Class d: Alpha and beta proteins (a+b) [53931] (208 folds)

Folds:

  1. 128815d.1: Microbial ribonucleases [53932] (1 superfamily)
  2. 129072d.2: Lysozyme-like [53954] (1 superfamily)
  3. 129971d.3: Cysteine proteinases [54000] (1 superfamily)
  4. 130169d.4: His-Me finger endonucleases [54059] (1 superfamily)
  5. 130218d.5: RNase A-like [54075] (1 superfamily)
  6. 130410d.6: Prion-like [54097] (1 superfamily)
  7. 130442d.7: LysM domain [54105] (1 superfamily)
  8. 130449d.8: Urease, gamma-subunit [54110] (1 superfamily)
  9. 130488d.9: IL8-like [54116] (2 superfamilies)
  10. 130678d.10: DNA-binding domain [54170] (1 superfamily)
  11. 130701d.11: Penicillin-binding protein 2x (pbp-2x), c-terminal domain [54183] (1 superfamily)
  12. 130720d.12: Ribosomal proteins L23 and L15e [54188] (1 superfamily)
  13. 130734d.13: HIT-like [54196] (1 superfamily)
  14. 130799d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
  15. 130887d.15: beta-Grasp (ubiquitin-like) [54235] (9 superfamilies)
  16. 131415d.16: FAD-linked reductases, C-terminal domain [54372] (1 superfamily)
  17. 131584d.17: Cystatin-like [54402] (5 superfamilies)
  18. 131810d.18: Transcriptional coactivator PC4 C-terminal domain [54446] (1 superfamily)
  19. 131823d.19: MHC antigen-recognition domain [54451] (1 superfamily)
  20. 132102d.20: Ubiquitin conjugating enzyme [54494] (1 superfamily)
  21. 132145d.21: Diaminopimelate epimerase [54505] (1 superfamily)
  22. 132152d.22: GFP-like [54510] (1 superfamily)
  23. 132208d.23: Transcriptional factor tubby, C-terminal domain [54517] (1 superfamily)
  24. 132215d.24: Pilin [54522] (1 superfamily)
  25. 132226d.25: Acidic mitochondrial matrix protein p32 [54528] (1 superfamily)
  26. 132234d.26: FKBP-like [54533] (3 superfamilies)
  27. 132353d.27: Ribosomal protein S16 [54564] (1 superfamily)
  28. 132369d.28: Ribosomal protein S19 [54569] (1 superfamily)
  29. 132386d.29: Ribosomal protein L31e [54574] (1 superfamily)
  30. 132394d.30: Allophycocyanin linker chain (domain) [54579] (1 superfamily)
  31. 132401d.31: Cdc48 domain 2-like [54584] (1 superfamily)
  32. 132421d.32: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase [54592] (1 superfamily)
  33. 132525d.33: Bacterial protein-export protein SecB [54610] (1 superfamily)
  34. 132534d.34: DNA-binding domain of Mlu1-box binding protein MBP1 [54615] (1 superfamily)
  35. 132541d.35: Heme-binding protein A (HasA) [54620] (1 superfamily)
  36. 132550d.36: Chalcone isomerase [54625] (1 superfamily)
  37. 132565d.37: CBS-domain [54630] (1 superfamily)
  38. 132578d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
  39. 132598d.39: Dynein light chain 8 (DLC8) [54647] (1 superfamily)
  40. 132612d.40: CI-2 family of serine protease inhibitors [54653] (1 superfamily)
  41. 132648d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
  42. 132737d.42: POZ domain [54694] (1 superfamily)
  43. 132802d.43: Elongation factor Ts (EF-Ts), dimerisation domain [54712] (1 superfamily)
  44. 132817d.44: Fe,Mn superoxide dismutase (SOD), C-terminal domain [54718] (1 superfamily)
  45. 132945d.45: Ribosomal protein L7/12, C-terminal domain [54735] (1 superfamily)
  46. 132956d.46: Transcription-state regulator AbrB, the N-terminal DNA recognition domain [54741] (1 superfamily)
  47. 132963d.47: Ribosomal protein L11, N-terminal domain [54746] (1 superfamily)
  48. 132969d.48: Anti-LPS factor/recA domain [54751] (2 superfamilies)
  49. 132985d.49: Signal recognition particle alu RNA binding heterodimer, SRP9/14 [54761] (1 superfamily)
  50. 132998d.50: dsRBD-like [54767] (3 superfamilies)
  51. 133044d.51: Eukaryotic type KH-domain (eKH-domain) [54790] (1 superfamily)
  52. 133071d.52: Alpha-lytic protease prodomain-like [54805] (3 superfamilies)
  53. 133129d.53: Ribosomal protein S3 C-terminal domain [54820] (1 superfamily)
  54. 133144d.54: Enolase N-terminal domain-like [54825] (1 superfamily)
  55. 133247d.55: Ribosomal protein L22 [54842] (1 superfamily)
  56. 133257d.56: GroEL-like chaperone, intermediate domain [54848] (1 superfamily)
  57. 133313d.57: DNA damage-inducible protein DinI [54856] (1 superfamily)
  58. 133319d.58: Ferredoxin-like [54861] (39 superfamilies)
  59. 134343d.59: Ribosomal protein L30p/L7e [55128] (1 superfamily)
  60. 134355d.60: Probable bacterial effector-binding domain [55135] (1 superfamily)
  61. 134371d.61: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase [55143] (1 superfamily)
  62. 134382d.62: Pepsin inhibitor-3 [55148] (1 superfamily)
  63. 134389d.63: mRNA triphosphatase CET1 [55153] (1 superfamily)
  64. 134400d.64: eIF1-like [55158] (1 superfamily)
  65. 134409d.65: Hedgehog/DD-pepidase [55165] (1 superfamily)
  66. 134419d.66: Alpha-L RNA-binding motif [55173] (1 superfamily)
  67. 134446d.67: RRF/tRNA synthetase additional domain-like [55185] (3 superfamilies)
  68. 134472d.68: IF3-like [55199] (3 superfamilies)
  69. 134520d.69: C-terminal domain of TolA [55215] (1 superfamily)
  70. 134526d.70: Yest killer toxins [55220] (1 superfamily)
  71. 134540d.71: Cell division protein MinE topological specificity domain [55228] (1 superfamily)
  72. 134547d.72: Cyanase C-terminal domain [55233] (1 superfamily)
  73. 134572d.73: RuBisCO, small subunit [55238] (1 superfamily)
  74. 134642d.74: DCoH-like [55247] (4 superfamilies)
  75. 134753d.75: MutS N-terminal domain-like [55266] (2 superfamilies)
  76. 134773d.76: GYF domain [55276] (1 superfamily)
  77. 134779d.77: Ribosomal protein L5 [55281] (1 superfamily)
  78. 134790d.78: RPB5-like RNA polymerase subunit [55286] (1 superfamily)
  79. 134814d.79: Bacillus chorismate mutase-like [55297] (5 superfamilies)
  80. 134931d.80: Tautomerase/MIF [55330] (1 superfamily)
  81. 135038d.81: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55346] (1 superfamily)
  82. 135259d.82: N domain of copper amine oxidase-like [55382] (2 superfamilies)
  83. 135293d.83: Bactericidal permeability-increasing protein, BPI [55393] (1 superfamily)
  84. 135302d.84: Subtilisin inhibitor [55398] (1 superfamily)
  85. 135313d.85: RNA bacteriophage capsid protein [55404] (1 superfamily)
  86. 135449d.86: Translation initiation factor eIF4e [55417] (1 superfamily)
  87. 135463d.87: CO dehydrogenase flavoprotein C-domain-like [55423] (2 superfamilies)
  88. 135595d.88: SRF-like [55454] (1 superfamily)
  89. 135620d.89: Origin of replication-binding domain [55463] (1 superfamily)
  90. 135632d.90: NADH oxidase/flavin reductase [55468] (1 superfamily)
  91. 135681d.91: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [55480] (1 superfamily)
  92. 135687d.92: Zincin-like [55485] (2 superfamilies)
  93. 135973d.93: SH2-like [55549] (1 superfamily)
  94. 136161d.94: HPr-like [55593] (1 superfamily)
  95. 136197d.95: Homing endonuclease-like [55603] (2 superfamilies)
  96. 136237d.96: T-fold [55619] (1 superfamily)
  97. 136363d.97: Cell cycle regulatory proteins [55636] (1 superfamily)
  98. 136390d.98: beta-lactamase-inhibitor protein, BLIP [55647] (1 superfamily)
  99. 136397d.99: Ribosomal protein L9 C-domain [55652] (1 superfamily)
  100. 136403d.100: L9 N-domain-like [55657] (1 superfamily)
  101. 136413d.101: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 [55665] (1 superfamily)
  102. 136422d.102: Regulatory factor Nef [55670] (1 superfamily)
  103. 136433d.103: Mosquitocidal delta-endotoxin CytB [55675] (1 superfamily)
  104. 136439d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
  105. 136583d.105: Clathrin adaptor appendage domain [55710] (1 superfamily)
  106. 136595d.106: Sterol carrier protein, SCP [55717] (1 superfamily)
  107. 136606d.107: Ran-binding protein mog1p [55723] (1 superfamily)
  108. 136612d.108: Acyl-CoA N-acyltransferases (Nat) [55728] (1 superfamily)
  109. 136694d.109: Actin depolymerizing proteins [55752] (1 superfamily)
  110. 136761d.110: Profilin-like [55769] (4 superfamilies)
  111. 136855d.111: PR-1-like [55796] (1 superfamily)
  112. 136864d.112: Phoshotransferase/anion transport protein [55803] (1 superfamily)
  113. 136884d.113: Nudix [55810] (1 superfamily)
  114. 136911d.114: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain [55815] (1 superfamily)
  115. 136919d.115: YrdC/RibB [55820] (1 superfamily)
  116. 136934d.116: Hypothetical protein HI1434 (YbaK homologue) [55825] (1 superfamily)
  117. 136942d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
  118. 137112d.118: Bacteriophage T7 lysozyme (Zn amidase) [55845] (1 superfamily)
  119. 137119d.120: Cytochrome b5 [55855] (1 superfamily)
  120. 137170d.121: DNA topoisomerase I domain [55868] (1 superfamily)
  121. 137176d.122: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55873] (1 superfamily)
  122. 137245d.123: Sporulation responce regulatory protein Spo0B [55889] (1 superfamily)
  123. 137256d.124: Ribonuclease Rh-like [55894] (1 superfamily)
  124. 137271d.125: Ornithine decarboxylase C-terminal domain [55903] (1 superfamily)
  125. 137279d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
  126. 137310d.127: Creatinase/aminopeptidase [55919] (1 superfamily)
  127. 137346d.128: Glutamine synthase/guanidino kinase catalytic domain [55930] (1 superfamily)
  128. 137429d.129: TBP-like [55944] (4 superfamilies)
  129. 137596d.130: S-adenosylmethionine synthetase [55972] (1 superfamily)
  130. 137632d.131: DNA clamp [55978] (1 superfamily)
  131. 137700d.133: Molybdemum cofactor-binding domain [56002] (1 superfamily)
  132. 137732d.134: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 [56013] (1 superfamily)
  133. 137761d.135: The spindle assembly checkpoint protein mad2 [56018] (1 superfamily)
  134. 137768d.136: Phospholipase D/nuclease [56023] (1 superfamily)
  135. 137785d.137: Monooxygenase (hydroxylase) regulatory protein [56028] (1 superfamily)
  136. 137800d.138: B3/B4 domain of PheRS, PheT [56036] (1 superfamily)
  137. 137810d.139: Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain [56041] (1 superfamily)
  138. 137819d.140: Ribosomal protein S8 [56046] (1 superfamily)
  139. 137842d.141: Ribosomal protein L6 [56052] (1 superfamily)
  140. 137856d.142: ATP-grasp [56058] (2 superfamilies)
  141. 138032d.143: SAICAR synthase-like [56103] (1 superfamily)
  142. 138043d.144: Protein kinase-like (PK-like) [56111] (1 superfamily)
  143. 138297d.145: FAD-binding domain [56175] (1 superfamily)
  144. 138374d.146: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain [56193] (1 superfamily)
  145. 138385d.147: Methenyltetrahydromethanopterin cyclohydrolase [56198] (1 superfamily)
  146. 138391d.148: Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) [56203] (1 superfamily)
  147. 138402d.149: Nitrile hydratase alpha chain [56208] (1 superfamily)
  148. 138413d.150: 4'-phosphopantetheinyl transferase; possibly related to the IspF and YjgF-like superfamilies (SFlink) [56213] (1 superfamily)
  149. 138443d.151: DNase I-like [56218] (1 superfamily)
  150. 138472d.152: Aldehyde ferredoxin oxidoreductase, N-terminal domain [56227] (1 superfamily)
  151. 138489d.153: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56234] (1 superfamily)
  152. 138813d.154: L-aminopeptidase D-Ala-esterase/amidase [56265] (1 superfamily)
  153. 138824d.155: Histidine decarboxylase [56270] (1 superfamily)
  154. 138834d.156: S-adenosylmethionine decarboxylase [56275] (1 superfamily)
  155. 138849d.157: Metallo-hydrolase/oxidoreductase [56280] (1 superfamily)
  156. 138901d.158: Protein serine/threonine phosphatase 2C [56294] (1 superfamily)
  157. 138907d.159: Metallo-dependent phosphatases [56299] (1 superfamily)
  158. 138958d.160: Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase [56316] (1 superfamily)
  159. 138979d.161: ADC synthase [56321] (1 superfamily)
  160. 138998d.162: Lactate & malate dehydrogenases, C-terminal domain [56326] (1 superfamily)
  161. 139125d.163: DNA breaking-rejoining enzymes [56348] (1 superfamily)
  162. 139170d.164: SMAD MH1 domain [56365] (1 superfamily)
  163. 139177d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
  164. 139266d.166: ADP-ribosylation [56398] (1 superfamily)
  165. 139346d.167: Peptide deformylase [56419] (1 superfamily)
  166. 139383d.168: Succinate dehydrogenase/fumarate reductase catalytic domain [56424] (1 superfamily)
  167. 139425d.169: C-type lectin-like [56435] (1 superfamily)
  168. 139651d.170: SRCR-like [56486] (2 superfamilies)
  169. 139662d.171: Fibrinogen C-terminal domain-like [56495] (1 superfamily)
  170. 139716d.172: gp120 core [56501] (1 superfamily)
  171. 139724d.173: Methionine synthase (activation domain) [56506] (1 superfamily)
  172. 139732d.174: Nitric oxide (NO) synthase oxygenase domain [56511] (1 superfamily)
  173. 139831d.175: Penicillin-binding protein 2x (pbp-2x), N-terminal domain [56518] (1 superfamily)
  174. 139843d.176: Sulfite oxidase, middle catalytic domain [56523] (1 superfamily)
  175. 139850d.177: FAH [56528] (1 superfamily)
  176. 139873d.178: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [56533] (1 superfamily)
  177. 139893d.179: Substrate-binding domain of HMG-CoA reductase [56541] (1 superfamily)
  178. 139939d.180: Conserved core of transcriptional regulatory protein vp16 [56547] (1 superfamily)
  179. 139945d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
  180. 139963d.182: Baseplate structural protein gp11 [56557] (1 superfamily)
  181. 139971d.183: Major capsid protein gp5 [56562] (1 superfamily)
  182. 139983d.184: Non-globular alpha+beta subunits of globular proteins [56567] (1 superfamily)
  183. 139995d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
  184. 140127d.186: Head-to-tail joining protein W, gpW [64209] (1 superfamily)
  185. 140133d.187: Photosystem I subunit PsaD [64233] (1 superfamily)
  186. 140139d.188: Prokaryotic ribosomal protein L17 [64262] (1 superfamily)
  187. 140153d.189: PX domain [64267] (1 superfamily)
  188. 140162d.190: Chorismate lyase [64287] (1 superfamily)
  189. 140172d.191: Dimeric C-terminal domain of membrane protein TonB [64324] (1 superfamily)
  190. 140179d.192: YlxR-like [64375] (1 superfamily)
  191. 140185d.193: Hsp33 domain [64396] (1 superfamily)
  192. 140192d.194: Type 1 cytotoxic necrotizing factor, catalytic domain [64437] (1 superfamily)
  193. 140199d.195: YopH tyrosine phosphatase N-terminal domain [64448] (1 superfamily)
  194. 140207d.196: Outer capsid protein sigma 3 [64464] (1 superfamily)
  195. 140217d.197: Protein-L-isoaspartyl O-methyltransferase, C-terminal domain [68929] (1 superfamily)
  196. 140224d.198: Secretion chaperone-like [69634] (2 superfamilies)
  197. 140256d.199: DNA-binding C-terminal domain of the transcription factor MotA [69651] (1 superfamily)
  198. 140267d.200: Integrin beta tail domain [69686] (1 superfamily)
  199. 140273d.201: SRP19 [69694] (1 superfamily)
  200. 140279d.202: Transcription factor NusA, N-terminal domain [69704] (1 superfamily)
  201. 140288d.203: DsrC, the gamma subunit of dissimilatory sulfite reductase [69720] (1 superfamily)
  202. 140294d.204: Ribosome binding protein Y (HI0257, YfiA homologue) [69753] (1 superfamily)
  203. 140300d.205: GTP cyclohydrolase I feedback regulatory protein, GFRP [69760] (1 superfamily)
  204. 140330d.206: Hypothetical protein MTH637 [69785] (1 superfamily)
  205. 140336d.207: Thymidylate synthase-complementing protein Thy1 [69795] (1 superfamily)
  206. 140345d.208: Hypothetical protein MTH1598 [69818] (1 superfamily)
  207. 140351d.209: LCCL domain [69847] (1 superfamily)
  208. 140357d.210: Argininosuccinate synthetase, C-terminal domain [69863] (1 superfamily)

More info for Class d: Alpha and beta proteins (a+b)

Timeline for Class d: Alpha and beta proteins (a+b):