Lineage for Class d: Alpha and beta proteins (a+b)

  1. Root: SCOP 1.57
  2. 75819Class d: Alpha and beta proteins (a+b) [53931] (194 folds)

Folds:

  1. 75820d.1: Microbial ribonucleases [53932] (1 superfamily)
  2. 76064d.2: Lysozyme-like [53954] (1 superfamily)
  3. 76916d.3: Cysteine proteinases [54000] (1 superfamily)
  4. 77113d.4: His-Me finger endonucleases [54059] (1 superfamily)
  5. 77162d.5: RNase A-like [54075] (1 superfamily)
  6. 77342d.6: Prion-like [54097] (1 superfamily)
  7. 77373d.7: LysM domain [54105] (1 superfamily)
  8. 77380d.8: Urease, gamma-subunit [54110] (1 superfamily)
  9. 77416d.9: IL8-like [54116] (2 superfamilies)
  10. 77601d.10: DNA-binding domain [54170] (1 superfamily)
  11. 77624d.11: Penicillin-binding protein 2x (pbp-2x), c-terminal domain [54183] (1 superfamily)
  12. 77635d.12: Ribosomal proteins L23 and L15e [54188] (1 superfamily)
  13. 77647d.13: HIT-like [54196] (1 superfamily)
  14. 77712d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
  15. 77788d.15: beta-Grasp (ubiquitin-like) [54235] (9 superfamilies)
  16. 78269d.16: FAD-linked reductases, C-terminal domain [54372] (1 superfamily)
  17. 78424d.17: Cystatin-like [54402] (5 superfamilies)
  18. 78634d.18: Transcriptional coactivator PC4 C-terminal domain [54446] (1 superfamily)
  19. 78647d.19: MHC antigen-recognition domain [54451] (1 superfamily)
  20. 78902d.20: Ubiquitin conjugating enzyme [54494] (1 superfamily)
  21. 78939d.21: Diaminopimelate epimerase [54505] (1 superfamily)
  22. 78946d.22: GFP-like [54510] (1 superfamily)
  23. 78994d.23: Transcriptional factor tubby, C-terminal domain [54517] (1 superfamily)
  24. 79001d.24: Pilin [54522] (1 superfamily)
  25. 79012d.25: Acidic mitochondrial matrix protein p32 [54528] (1 superfamily)
  26. 79020d.26: FKBP-like [54533] (3 superfamilies)
  27. 79132d.27: Ribosomal protein S16 [54564] (1 superfamily)
  28. 79148d.28: Ribosomal protein S19 [54569] (1 superfamily)
  29. 79165d.29: Ribosomal protein L31e [54574] (1 superfamily)
  30. 79172d.30: Allophycocyanin linker chain (domain) [54579] (1 superfamily)
  31. 79179d.31: Cdc48 domain 2-like [54584] (1 superfamily)
  32. 79199d.32: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase [54592] (1 superfamily)
  33. 79295d.33: Bacterial protein-export protein SecB [54610] (1 superfamily)
  34. 79304d.34: DNA-binding domain of Mlu1-box binding protein MBP1 [54615] (1 superfamily)
  35. 79311d.35: Heme-binding protein A (HasA) [54620] (1 superfamily)
  36. 79320d.36: Chalcone isomerase [54625] (1 superfamily)
  37. 79329d.37: CBS-domain [54630] (1 superfamily)
  38. 79342d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
  39. 79362d.39: Dynein light chain 8 (DLC8) [54647] (1 superfamily)
  40. 79376d.40: CI-2 family of serine protease inhibitors [54653] (1 superfamily)
  41. 79412d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
  42. 79490d.42: POZ domain [54694] (1 superfamily)
  43. 79555d.43: Elongation factor Ts (EF-Ts), dimerisation domain [54712] (1 superfamily)
  44. 79570d.44: Fe,Mn superoxide dismutase (SOD), C-terminal domain [54718] (1 superfamily)
  45. 79675d.45: Ribosomal protein L7/12, C-terminal domain [54735] (1 superfamily)
  46. 79686d.46: Transcription-state regulator AbrB, the N-terminal DNA recognition domain [54741] (1 superfamily)
  47. 79693d.47: Ribosomal protein L11, N-terminal domain [54746] (1 superfamily)
  48. 79699d.48: Anti-LPS factor/recA domain [54751] (2 superfamilies)
  49. 79715d.49: Signal recognition particle alu RNA binding heterodimer, SRP9/14 [54761] (1 superfamily)
  50. 79728d.50: dsRBD-like [54767] (3 superfamilies)
  51. 79774d.51: KH-domain [54790] (1 superfamily)
  52. 79802d.52: Alpha-lytic protease prodomain-like [54805] (3 superfamilies)
  53. 79847d.53: Ribosomal protein S3 C-terminal domain [54820] (1 superfamily)
  54. 79862d.54: Enolase N-terminal domain-like [54825] (1 superfamily)
  55. 79941d.55: Ribosomal protein L22 [54842] (1 superfamily)
  56. 79950d.56: GroEL-like chaperone, intermediate domain [54848] (1 superfamily)
  57. 79998d.57: DNA damage-inducible protein DinI [54856] (1 superfamily)
  58. 80004d.58: Ferredoxin-like [54861] (36 superfamilies)
  59. 80960d.59: Ribosomal protein L30p/L7e [55128] (1 superfamily)
  60. 80971d.60: Probable bacterial effector-binding domain [55135] (1 superfamily)
  61. 80987d.61: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase [55143] (1 superfamily)
  62. 80995d.62: Pepsin inhibitor-3 [55148] (1 superfamily)
  63. 81002d.63: mRNA triphosphatase CET1 [55153] (1 superfamily)
  64. 81013d.64: eIF1-like [55158] (1 superfamily)
  65. 81022d.65: Hedgehog/DD-pepidase [55165] (1 superfamily)
  66. 81032d.66: Alpha-L RNA-binding motif [55173] (1 superfamily)
  67. 81059d.67: RRF/tRNA synthetase additional domain-like [55185] (3 superfamilies)
  68. 81083d.68: IF3-like [55199] (3 superfamilies)
  69. 81127d.69: C-terminal domain of TolA [55215] (1 superfamily)
  70. 81133d.70: Yest killer toxins [55220] (1 superfamily)
  71. 81147d.71: Cell division protein MinE topological specificity domain [55228] (1 superfamily)
  72. 81154d.72: Cyanase C-terminal domain [55233] (1 superfamily)
  73. 81179d.73: RuBisCO, small subunit [55238] (1 superfamily)
  74. 81244d.74: DCoH-like [55247] (4 superfamilies)
  75. 81344d.75: MutS N-terminal domain-like [55266] (2 superfamilies)
  76. 81364d.76: GYF domain [55276] (1 superfamily)
  77. 81370d.77: Ribosomal protein L5 [55281] (1 superfamily)
  78. 81380d.78: RPB5-like RNA polymerase subunit [55286] (1 superfamily)
  79. 81402d.79: Bacillus chorismate mutase-like [55297] (4 superfamilies)
  80. 81513d.80: Tautomerase/MIF [55330] (1 superfamily)
  81. 81620d.81: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55346] (1 superfamily)
  82. 81800d.82: N domain of copper amine oxidase-like [55382] (2 superfamilies)
  83. 81832d.83: Bactericidal permeability-increasing protein, BPI [55393] (1 superfamily)
  84. 81841d.84: Subtilisin inhibitor [55398] (1 superfamily)
  85. 81852d.85: RNA bacteriophage capsid protein [55404] (1 superfamily)
  86. 81979d.86: Translation initiation factor eIF4e [55417] (1 superfamily)
  87. 81993d.87: CO dehydrogenase flavoprotein C-domain-like [55423] (2 superfamilies)
  88. 82114d.88: SRF-like [55454] (1 superfamily)
  89. 82137d.89: Origin of replication-binding domain [55463] (1 superfamily)
  90. 82149d.90: NADH oxidase/flavin reductase [55468] (1 superfamily)
  91. 82186d.91: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 [55480] (1 superfamily)
  92. 82192d.92: Zincin-like [55485] (2 superfamilies)
  93. 82452d.93: SH2-like [55549] (1 superfamily)
  94. 82634d.94: Histidine-containing phosphocarrier proteins (HPr) [55593] (1 superfamily)
  95. 82667d.95: Homing endonuclease-like [55603] (2 superfamilies)
  96. 82707d.96: T-fold [55619] (1 superfamily)
  97. 82812d.97: Cell cycle regulatory proteins [55636] (1 superfamily)
  98. d.98: beta-lactamase-inhibitor protein, BLIP [55647] (1 superfamily)
  99. 82845d.99: Ribosomal protein L9 C-domain [55652] (1 superfamily)
  100. 82851d.100: L9 N-domain-like [55657] (1 superfamily)
  101. 82861d.101: Polynucleotide phosphorylase/guanosine pentaphospate synthase (PNPase/GPSI), domains 2 and 5 [55665] (1 superfamily)
  102. 82870d.102: Regulatory factor Nef [55670] (1 superfamily)
  103. 82881d.103: Mosquitocidal delta-endotoxin CytB [55675] (1 superfamily)
  104. 82887d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
  105. 83027d.105: Clathrin adaptor appendage domain [55710] (1 superfamily)
  106. 83039d.106: Sterol carrier protein 2 (SCP2) [55717] (1 superfamily)
  107. 83047d.107: Ran-binding protein mog1p [55723] (1 superfamily)
  108. 83053d.108: Acyl-CoA N-acyltransferases (Nat) [55728] (1 superfamily)
  109. 83135d.109: Actin depolymerizing proteins [55752] (1 superfamily)
  110. 83190d.110: Profilin-like [55769] (4 superfamilies)
  111. 83280d.111: PR-1-like [55796] (1 superfamily)
  112. 83289d.112: Phoshotransferase/anion transport protein [55803] (1 superfamily)
  113. 83309d.113: Nudix [55810] (1 superfamily)
  114. 83335d.114: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain [55815] (1 superfamily)
  115. 83343d.115: YrdC/RibB [55820] (1 superfamily)
  116. 83357d.116: Hypothetical protein HI1434 (YbaK homologue) [55825] (1 superfamily)
  117. 83365d.117: Thymidylate synthase/dCMP hydroxymethylase [55830] (1 superfamily)
  118. 83533d.118: Bacteriophage T7 lysozyme (Zn amidase) [55845] (1 superfamily)
  119. 83540d.120: Cytochrome b5 [55855] (1 superfamily)
  120. 83591d.121: DNA topoisomerase I domain [55868] (1 superfamily)
  121. 83597d.122: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase [55873] (1 superfamily)
  122. 83645d.123: Sporulation responce regulatory protein Spo0B [55889] (1 superfamily)
  123. 83656d.124: Ribonuclease Rh-like [55894] (1 superfamily)
  124. 83668d.125: Ornithine decarboxylase C-terminal domain [55903] (1 superfamily)
  125. 83676d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
  126. 83707d.127: Creatinase/aminopeptidase [55919] (1 superfamily)
  127. 83743d.128: Glutamine synthase/guanidino kinase catalytic domain [55930] (1 superfamily)
  128. 83826d.129: TBP-like [55944] (4 superfamilies)
  129. 83986d.130: S-adenosylmethionine synthetase [55972] (1 superfamily)
  130. 84022d.131: DNA clamp [55978] (1 superfamily)
  131. 84084d.133: Molybdemum cofactor-binding domain [56002] (1 superfamily)
  132. 84106d.134: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 [56013] (1 superfamily)
  133. 84135d.135: The spindle assembly checkpoint protein mad2 [56018] (1 superfamily)
  134. 84141d.136: Phospholipase D/nuclease [56023] (1 superfamily)
  135. 84153d.137: Monooxygenase (hydroxylase) regulatory protein [56028] (1 superfamily)
  136. 84168d.138: B3/B4 domain of PheRS, PheT [56036] (1 superfamily)
  137. 84177d.139: Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain [56041] (1 superfamily)
  138. 84186d.140: Ribosomal protein S8 [56046] (1 superfamily)
  139. 84209d.141: Ribosomal protein L6 [56052] (1 superfamily)
  140. 84221d.142: ATP-grasp [56058] (2 superfamilies)
  141. 84382d.143: SAICAR synthase-like [56103] (1 superfamily)
  142. 84393d.144: Protein kinase-like (PK-like) [56111] (1 superfamily)
  143. 84620d.145: FAD-binding domain [56175] (1 superfamily)
  144. 84687d.146: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain [56193] (1 superfamily)
  145. 84698d.147: Methenyltetrahydromethanopterin cyclohydrolase [56198] (1 superfamily)
  146. 84704d.148: Ubiquitin-protein ligase E3a, Hect catalytic domain (E6ap) [56203] (1 superfamily)
  147. 84715d.149: Nitrile hydratase alpha chain [56208] (1 superfamily)
  148. 84726d.150: 4'-phosphopantetheinyl transferase [56213] (1 superfamily)
  149. 84756d.151: DNase I-like [56218] (1 superfamily)
  150. 84785d.152: Aldehyde ferredoxin oxidoreductase, N-terminal domain [56227] (1 superfamily)
  151. 84802d.153: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56234] (1 superfamily)
  152. 85054d.154: L-aminopeptidase D-Ala-esterase/amidase [56265] (1 superfamily)
  153. 85065d.155: Histidine decarboxylase [56270] (1 superfamily)
  154. 85075d.156: S-adenosylmethionine decarboxylase [56275] (1 superfamily)
  155. 85090d.157: Metallo-hydrolase/oxidoreductase [56280] (1 superfamily)
  156. 85140d.158: Protein serine/threonine phosphatase 2C [56294] (1 superfamily)
  157. 85146d.159: Metallo-dependent phosphatases [56299] (1 superfamily)
  158. 85197d.160: Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase [56316] (1 superfamily)
  159. 85214d.161: Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE [56321] (1 superfamily)
  160. 85227d.162: Lactate & malate dehydrogenases, C-terminal domain [56326] (1 superfamily)
  161. 85334d.163: DNA breaking-rejoining enzymes [56348] (1 superfamily)
  162. 85377d.164: SMAD MH1 domain [56365] (1 superfamily)
  163. 85384d.165: Ribosome inactivating proteins (RIP) [56370] (1 superfamily)
  164. 85464d.166: ADP-ribosylation [56398] (1 superfamily)
  165. 85537d.167: Peptide deformylase [56419] (1 superfamily)
  166. 85568d.168: Succinate dehydrogenase/fumarate reductase catalytic domain [56424] (1 superfamily)
  167. 85600d.169: C-type lectin-like [56435] (1 superfamily)
  168. 85792d.170: SRCR-like [56486] (2 superfamilies)
  169. 85803d.171: Fibrinogen C-terminal domains [56495] (1 superfamily)
  170. 85847d.172: gp120 core [56501] (1 superfamily)
  171. 85855d.173: Methionine synthase (activation domain) [56506] (1 superfamily)
  172. 85861d.174: Nitric oxide (NO) synthase oxygenase domain [56511] (1 superfamily)
  173. 85948d.175: Penicillin-binding protein 2x (pbp-2x), N-terminal domain [56518] (1 superfamily)
  174. 85956d.176: Sulfite oxidase, middle catalytic domain [56523] (1 superfamily)
  175. 85963d.177: FAH [56528] (1 superfamily)
  176. 85986d.178: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains [56533] (1 superfamily)
  177. 86006d.179: Substrate-binding domain of HMG-CoA reductase [56541] (1 superfamily)
  178. 86052d.180: Conserved core of transcriptional regulatory protein vp16 [56547] (1 superfamily)
  179. 86058d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
  180. 86075d.182: Baseplate structural protein gp11 [56557] (1 superfamily)
  181. 86083d.183: Major capsid protein gp5 [56562] (1 superfamily)
  182. 86095d.184: Non-globular alpha beta subunits of globular proteins [56567] (1 superfamily)
  183. 86102d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
  184. 86231d.186: Head-to-tail joining protein W, gpW [64209] (1 superfamily)
  185. 86237d.187: Photosystem I subunit PsaD [64233] (1 superfamily)
  186. 86243d.188: Prokaryotic ribosomal protein L17 [64262] (1 superfamily)
  187. 86257d.189: PX domain [64267] (1 superfamily)
  188. 86263d.190: Chorismate lyase [64287] (1 superfamily)
  189. 86273d.191: Dimeric C-terminal domain of membrane protein TonB [64324] (1 superfamily)
  190. 86280d.192: YlxR-like [64375] (1 superfamily)
  191. 86286d.193: Hsp33 domain [64396] (1 superfamily)
  192. 86293d.194: Type 1 cytotoxic necrotizing factor, catalytic domain [64437] (1 superfamily)
  193. 86300d.195: YopH tyrosine phosphatase N-terminal domain [64448] (1 superfamily)
  194. 86306d.196: Outer capsid protein sigma 3 [64464] (1 superfamily)

More info for Class d: Alpha and beta proteins (a+b)

Timeline for Class d: Alpha and beta proteins (a+b):