SCOPe 2.08: Family c.1.8.7: NagZ-like

Lineage for Family c.1.8.7: NagZ-like

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.7: NagZ-like [51553] (4 proteins)
   Pfam PF00933; Glycosyl hydrolase family 3 domain
   Some members have reversed beta strand compared to other members of fold

Proteins:

1. Beta-D-glucan exohydrolase, N-terminal domain [51554] (2 species)
   interdomain linker forms an additional, N-terminal strand

   1. Species Barley (Hordeum vulgare) [TaxId:4513] [51555] (9 PDB entries)

   2. Species Hordeum vulgare [TaxId:112509] [270746] (7 PDB entries)

2. Beta-glucosidase [254415] (2 species)
   second beta strand is antiparallel to the rest

   1. Species Kluyveromyces marxianus [TaxId:4911] [254855] (2 PDB entries)

   2. Species Thermotoga neapolitana [TaxId:309803] [254854] (2 PDB entries)

3. Beta-hexosaminidase NagZ [117370] (1 species)

   • Species Vibrio cholerae [TaxId:666] [117371] (3 PDB entries)
     Uniprot Q9KU37

4. automated matches [191056] (3 species)
   not a true protein

   1. Species Hordeum vulgare [TaxId:112509] [270740] (32 PDB entries)

   2. Species Thermotoga neapolitana [TaxId:309803] [255674] (4 PDB entries)

   3. Species Vibrio cholerae [TaxId:666] [188936] (2 PDB entries)

More info for Family c.1.8.7: NagZ-like

Timeline for Family c.1.8.7: NagZ-like:

• Family c.1.8.7: NagZ-like first appeared (with stable ids) in SCOP 1.55, called Family c.1.8.7: Beta-D-glucan exohydrolase, N-terminal domain
  
• Family c.1.8.7: NagZ-like appears in SCOPe 2.07