Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2312794Fold a.24: Four-helical up-and-down bundle [47161] (28 superfamilies)
    core: 4 helices; bundle, closed or partly opened, left-handed twist; up-and-down
  4. 2313855Superfamily a.24.16: Nucleotidyltransferase substrate binding subunit/domain [81593] (5 families) (S)
  5. 2313856Family a.24.16.1: Kanamycin nucleotidyltransferase (KNTase), C-terminal domain [81592] (2 proteins)
    N-terminal catalytic domain is followed by an all-alpha domain
    automatically mapped to Pfam PF07827
  6. 2313863Protein automated matches [379001] (3 species)
    not a true protein

Species:

  1. 2313864Bacillus sp. [TaxId:1409] [379552] (4 PDB entries)
    1. Domains for 6p01:
      1. 2313865Domain d6p01a2: 6p01 A:126-253 [379576]
        Other proteins in same PDB: d6p01a1, d6p01b1
        automated match to d1kana1
        protein/DNA complex; complexed with cl, gol, mg; mutant
      2. 2313866Domain d6p01b2: 6p01 B:126-253 [379614]
        Other proteins in same PDB: d6p01a1, d6p01b1
        automated match to d1kana1
        protein/DNA complex; complexed with cl, gol, mg; mutant
    2. Domains for 6p04:
      1. 2313869Domain d6p04a2: 6p04 A:126-253 [379560]
        Other proteins in same PDB: d6p04a1, d6p04b1
        automated match to d1kana1
        protein/DNA complex; complexed with mg, nmy; mutant
      2. 2313870Domain d6p04b2: 6p04 B:126-253 [379586]
        Other proteins in same PDB: d6p04a1, d6p04b1
        automated match to d1kana1
        protein/DNA complex; complexed with mg, nmy; mutant
    3. Domains for 6p06:
      1. 2313871Domain d6p06a2: 6p06 A:126-253 [379557]
        Other proteins in same PDB: d6p06a1, d6p06b1
        automated match to d1kana1
        protein/DNA complex; complexed with apc, ca, nmy; mutant
      2. 2313872Domain d6p06b2: 6p06 B:126-253 [379555]
        Other proteins in same PDB: d6p06a1, d6p06b1
        automated match to d1kana1
        protein/DNA complex; complexed with apc, ca, nmy; mutant
    4. Domains for 6p08:
      1. 2313867Domain d6p08a2: 6p08 A:126-253 [379633]
        Other proteins in same PDB: d6p08a1, d6p08d1
        automated match to d1kana1
        protein/DNA complex; complexed with amp, mg, nmy, ppv; mutant
      2. 2313868Domain d6p08d2: 6p08 D:126-253 [379553]
        Other proteins in same PDB: d6p08a1, d6p08d1
        automated match to d1kana1
        protein/DNA complex; complexed with amp, mg, nmy, ppv; mutant
  2. 2313873Geobacillus stearothermophilus [TaxId:1422] [379002] (4 PDB entries)
    1. Domains for 6nmk:
      1. 2313876Domain d6nmka2: 6nmk A:126-253 [379046]
        Other proteins in same PDB: d6nmka1, d6nmkb1
        automated match to d1kana1
        protein/DNA complex; complexed with ca, mg, nmy; mutant
      2. 2313877Domain d6nmkb2: 6nmk B:126-253 [379038]
        Other proteins in same PDB: d6nmka1, d6nmkb1
        automated match to d1kana1
        protein/DNA complex; complexed with ca, mg, nmy; mutant
    2. Domains for 6nml:
      1. 2313878Domain d6nmla2: 6nml A:126-253 [379011]
        Other proteins in same PDB: d6nmla1, d6nmlb1
        automated match to d1kana1
        protein/DNA complex; complexed with apc, mg, nmy; mutant
      2. 2313879Domain d6nmlb2: 6nml B:126-253 [379014]
        Other proteins in same PDB: d6nmla1, d6nmlb1
        automated match to d1kana1
        protein/DNA complex; complexed with apc, mg, nmy; mutant
    3. Domains for 6nmm:
      1. 2313880Domain d6nmma2: 6nmm A:126-253 [379003]
        Other proteins in same PDB: d6nmma1, d6nmmb1, d6nmmc1, d6nmmd1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      2. 2313881Domain d6nmmb2: 6nmm B:126-253 [379009]
        Other proteins in same PDB: d6nmma1, d6nmmb1, d6nmmc1, d6nmmd1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      3. 2313882Domain d6nmmc2: 6nmm C:126-253 [379070]
        Other proteins in same PDB: d6nmma1, d6nmmb1, d6nmmc1, d6nmmd1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
      4. 2313883Domain d6nmmd2: 6nmm D:126-253 [379040]
        Other proteins in same PDB: d6nmma1, d6nmmb1, d6nmmc1, d6nmmd1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy, ppv; mutant
    4. Domains for 6nmn:
      1. 2313874Domain d6nmna2: 6nmn A:126-253 [379022]
        Other proteins in same PDB: d6nmna1, d6nmnb1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy; mutant
      2. 2313875Domain d6nmnb2: 6nmn B:126-253 [379053]
        Other proteins in same PDB: d6nmna1, d6nmnb1
        automated match to d1kana1
        protein/DNA complex; complexed with a, mg, nmy; mutant
  3. 2313884Staphylococcus aureus [TaxId:1280] [379545] (2 PDB entries)
    1. Domains for 6nlt:
      1. 2313887Domain d6nlta2: 6nlt A:126-253 [379570]
        Other proteins in same PDB: d6nlta1, d6nltb1
        automated match to d1kana1
        complexed with ca; mutant
      2. 2313888Domain d6nltb2: 6nlt B:126-253 [379546]
        Other proteins in same PDB: d6nlta1, d6nltb1
        automated match to d1kana1
        complexed with ca; mutant
    2. Domains for 6un8:
      1. 2313885Domain d6un8a2: 6un8 A:126-253 [385126]
        Other proteins in same PDB: d6un8a1, d6un8b1
        automated match to d1kana1
        complexed with mg, nmy
      2. 2313886Domain d6un8b2: 6un8 B:126-253 [385110]
        Other proteins in same PDB: d6un8a1, d6un8b1
        automated match to d1kana1
        complexed with mg, nmy

More info for Protein automated matches from a.24.16.1: Kanamycin nucleotidyltransferase (KNTase), C-terminal domain

Timeline for Protein automated matches from a.24.16.1: Kanamycin nucleotidyltransferase (KNTase), C-terminal domain:

  • Protein automated matches from a.24.16.1: Kanamycin nucleotidyltransferase (KNTase), C-terminal domain is new in SCOPe 2.07-stable
  • Protein automated matches from a.24.16.1: Kanamycin nucleotidyltransferase (KNTase), C-terminal domain appears in the current release, SCOPe 2.08