SCOPe 2.08: Domain d5z6ca_: 5z6c A:

Lineage for d5z6ca_ (5z6c A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:224308] [194551] (7 PDB entries)

8. Domain d5z6ca_: 5z6c A: [362973]
   automated match to d4r6ka_

Details for d5z6ca_

PDB Entry: 5z6c, 1.97 Å

PDB Description: crystal structure of bacillus subtilis sugar-binding protein yeso involved in import of rhamnogalacturonan

PDB Compounds: (A:) Putative ABC transporter substrate-binding protein YesO

SCOPe Domain Sequences for d5z6ca_:

Sequence, based on SEQRES records:

>d5z6ca_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}
tlriawwggqprhdyttkvielyekknphvhieaefanwddywkklapmsaagqlpdviq
mdtaylaqygkknqledltpytkdgtidvssidenmlsggkidnklygftlgvnvlsvia
nedllkkagvsinqenwtwedyeklaydlqekagvygsngmhppdiffpyylrtkgerfy
kedgtglayqddqlfvdyferqlrlvkaktsptpdesaqikgmeddfivkgksaitwnys
nqylgfarltdsplslylppeqmqekaltlkpsmlfsipkssehkkeaakfinffvnnee
anqlikgergvpvsdkvadaikpklneeetniveyvetaskniskadppepvgsaevikl
lkdtsdqilyqkvspekaaktfrkkaneilern

Sequence, based on observed residues (ATOM records):

>d5z6ca_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}
tlriawwggqprhdyttkvielyekknphvhieaefanwddywkklapmsaagqlpdviq
mdtaylaqygkknqledltpytkdgtidvssidenmlsggkidnklygftlgvnvlsvia
nedllkkagvsinqenwtwedyeklaydlqekagvygsngmhppdiffpyylrtkgerfy
kedgtglayqddqlfvdyferqlrlvkaktsdfivsaitwnysnqylgfarltdsplsly
lppeqmqekaltlkpsmlfsipkssehkkeaakfinffvnneeanqlikgergvpvsdkv
adaikpklneeetniveyvetaskniskadppepvgsaevikllkdtsdqilyqkvspek
aaktfrkkaneilern

Timeline for d5z6ca_:

• d5z6ca_ first appeared in SCOPe 2.07