SCOPe 2.07: Domain d6b88a_: 6b88 A:

Lineage for d6b88a_ (6b88 A:)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.87: LexA/Signal peptidase [51305] (1 superfamily)
   complex fold made of several coiled beta-sheets; contains an SH3-like barrel

4. Superfamily b.87.1: LexA/Signal peptidase [51306] (3 families)

5. Family b.87.1.2: Type 1 signal peptidase [51312] (1 protein)
   contains additional all-beta subdomain inserted in the superfamily fold

6. Protein Type 1 signal peptidase [51313] (1 species)

7. Species Escherichia coli [TaxId:562] [51314] (6 PDB entries)
   Uniprot P00803 81-324

8. Domain d6b88a_: 6b88 A: [358416]
   automated match to d1kn9a_
   complexed with 1pe, czd

Details for d6b88a_

PDB Entry: 6b88, 2.41 Å

PDB Description: e. coli lepb in complex with gne0775 ((4s,7s,10s)-10-((s)-4-amino-2- (2-(4-(tert-butyl)phenyl)-4-methylpyrimidine-5-carboxamido)-n- methylbutanamido)-16,26-bis(2-aminoethoxy)-n-(2-iminoethyl)-7-methyl- 6,9-dioxo-5,8-diaza-1,2(1,3)-dibenzenacyclodecaphane-4-carboxamide)

PDB Compounds: (A:) Signal peptidase I

SCOPe Domain Sequences for d6b88a_:

Sequence, based on SEQRES records:

>d6b88a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
rsfiyepfqipsgsmmptlligdfilvekfaygikdpiyqktlietghpkrgdivvfkyp
edpkldyikravglpgdkvtydpvskeltiqpgcssgqacenalpvtysnvepsdfvqtf
srrnggeatsgffevpknetkengirlserketlgdvthriltvpiaqdqvgmyyqqpgq
qlatwivppgqyfmmgdnrdnsadsrywgfvpeanlvgrataiwmsfdkqegewptglrl
sriggih

Sequence, based on observed residues (ATOM records):

>d6b88a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
rsfiyepfqipsgsmmptlligdfilvekfaygikdpiyqktlietghpkrgdivvfkyp
edpkldyikravglpgdkvtydpvskeltiqpgcssgqacenalpvtysnvepsdfvqtf
srrnggeatsgffevpknetkengirlserketlgdvthriltvpiaqdqvgmyyqqpgq
qlatwivppgqyfmmgdnrdnsadsrywgfvpeanlvgrataiwmsfdglrlsriggih

Timeline for d6b88a_:

• d6b88a_ is new in SCOPe 2.07-stable
  
• d6b88a_ appears in the current release, SCOPe 2.08