SCOPe 2.08: Domain d2dpma_: 2dpm A:

Lineage for d2dpma_ (2dpm A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.28: N6 adenine-specific DNA methylase, DAM [88788] (3 proteins)
   automatically mapped to Pfam PF02086

6. Protein DNA methylase DpnM [53373] (1 species)

7. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [53374] (1 PDB entry)

8. Domain d2dpma_: 2dpm A: [34246]
   protein/DNA complex; complexed with hg, sam

Details for d2dpma_

PDB Entry: 2dpm, 1.8 Å

PDB Description: dpnm dna adenine methyltransferase from streptoccocus pneumoniae complexed with s-adenosylmethionine

PDB Compounds: (A:) protein (adenine-specific methyltransferase dpnii 1)

SCOPe Domain Sequences for d2dpma_:

Sequence, based on SEQRES records:

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
tlqpftkwtggkrqllpvirelipktynryfepfvgggalffdlapkdavindfnaelin
cyqqikdnpqelieilkvhqeynskeyyldlrsadrderidmmsevqraarilymlrvnf
nglyrvnsknqfnvpygryknpkivdeelisaisvyinnnqleikvgdfekaivdvrtgd
fvyfdppyiplsetsaftsythegfsfadqvrlrdafkrlsdtgayvmlsnsssalveel
ykdfnihyveatrtngaksssrgkiseiivtnyek

Sequence, based on observed residues (ATOM records):

>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
tlqpftkwtggkrqllpvirelipktynryfepfvgggalffdlapkdavindfnaelin
cyqqikdnpqelieilkvhqeynskeyyldlrsadrderidmmsevqraarilymlrvnf
nglyrvnsknqfnvpygryknpkivdeelisaisvyinnnqleikvgdfekaivdvrtgd
fvyfdppyiplftsythegfsfadqvrlrdafkrlsdtgayvmlsnsssalveelykdfn
ihyvegkiseiivtnyek

Timeline for d2dpma_:

• d2dpma_ first appeared (with stable ids) in SCOP 1.55
  
• d2dpma_ appears in SCOPe 2.07