SCOPe 2.06: Domain d5mdmf_: 5mdm F:

Lineage for d5mdmf_ (5mdm F:)

1. Root: SCOPe 2.06

2. Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)

3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families)

5. Family e.76.1.0: automated matches [327212] (1 protein)
   not a true family

6. Protein automated matches [327213] (1 species)
   not a true protein

7. Species Chandipura virus [TaxId:11272] [327214] (1 PDB entry)

8. Domain d5mdmf_: 5mdm F: [327215]
   automated match to d5i2sa_
   complexed with fuc, nag, so4

Details for d5mdmf_

PDB Entry: 5mdm, 3 Å

PDB Description: structural intermediates in the fusion associated transition of vesiculovirus glycoprotein

PDB Compounds: (F:) Glycoprotein

SCOPe Domain Sequences for d5mdmf_:

Sequence, based on SEQRES records:

>d5mdmf_ e.76.1.0 (F:) automated matches {Chandipura virus [TaxId: 11272]}
ylsiafpentkldwkpvtkntrycpmggewflepglqeesflsstpigatpsksdgflch
aakwvttcdfrwygpkyithsihnikptrsdcdtalasyksgtlvslgfppescgyasvt
dseflvimitphhvgvddyrghwvdplfvggecdqsycdtihnssvwipadqtkknicgq
sftpltvtvaydktkeiaaggivfkskyhshmegartcrlsycgrngikfpngewvsldv
ktriqekhllplfkecpagtevrstlqsdgaqvltseiqrildyslcqntwdkverkepl
spldlsylaskspgkglaytvingtlsfahtryvrmwidgpvlkepkgkrespsgissdi
wtqwfkygdmeigpngllktaggykfpwhligmgivdnelhelse

Sequence, based on observed residues (ATOM records):

>d5mdmf_ e.76.1.0 (F:) automated matches {Chandipura virus [TaxId: 11272]}
ylsiafpentkldwkpvtkntrycpmggewflepglqeesflsstpigatpsksdgflch
aakwvttcdfrwygpkyithsihnikptrsdcdtalasyksgtlvslgfppescgyasvt
dseflvimitphhvgvddyrghwvdplfvggecdqsycdtihnssvwipadqtkknicgq
sftpltvtvaydktkeiaaggivfkskyhshmegartcrlsycgrngikfpngewvsldv
ktriqekhllplfkecpagtevrstlqsaqvltseiqrildyslcqntwdkverkeplsp
ldlsylaskspgkglaytvingtlsfahtryvrmwidgpvlkepkgkrespsgissdiwt
qwfkygdmeigpngllktaggykfpwhligmelhelse

Timeline for d5mdmf_:

• d5mdmf_ is new in SCOPe 2.06-stable
  
• d5mdmf_ appears in SCOPe 2.07
  
• d5mdmf_ appears in the current release, SCOPe 2.08