SCOPe 2.07: Domain d5krta1: 5krt A:57-207

Lineage for d5krta1 (5krt A:57-207)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)

6. Protein Retroviral integrase, catalytic domain [53108] (4 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (73 PDB entries)

8. Domain d5krta1: 5krt A:57-207 [323407]
   Other proteins in same PDB: d5krta2
   automated match to d1biza_
   complexed with 6w6

Details for d5krta1

PDB Entry: 5krt, 1.65 Å

PDB Description: hiv-1 integrase catalytic core domain (ccd) in complex with a fragment-derived allosteric inhibitor

PDB Compounds: (A:) integrase

SCOPe Domain Sequences for d5krta1:

Sequence, based on SEQRES records:

>d5krta1 c.55.3.2 (A:57-207) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnkkrkggiggysagerivdiiatd

Sequence, based on observed residues (ATOM records):

>d5krta1 c.55.3.2 (A:57-207) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqefgipynpgviesmnkelkkiigqvrdqaehlktavqma
vfihnkkrggysagerivdiiatd

Timeline for d5krta1:

• d5krta1 first appeared in SCOPe 2.06
  
• d5krta1 appears in the current release, SCOPe 2.08