SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds)
Fold a.143: RPB6/omega subunit-like [63561] (1 superfamily)
core: 2 helices and adjacent loops

Superfamily a.143.1: RPB6/omega subunit-like [63562] (2 families)

the bacterial omega and eukaryotic RPB6 subunits both function in polymerase assembly; the common core is involved in conserved interactions with other subunits

Family a.143.1.2: RPB6 [55294] (2 proteins)
Protein automated matches [254699] (4 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255949] (3 PDB entries)

Domain for 3m3y:

Domain d3m3yf_: 3m3y F: [247592]
Other proteins in same PDB: d3m3ya_, d3m3yb_, d3m3ye1, d3m3ye2, d3m3yh_, d3m3yi1, d3m3yi2, d3m3yj_, d3m3yk_, d3m3yl_
automated match to d1twff_
protein/DNA complex; protein/RNA complex; complexed with c7p, mg, zn

Domain for 3s1m:

Domain d3s1mf_: 3s1m F: [249267]
Other proteins in same PDB: d3s1ma_, d3s1mb_, d3s1me1, d3s1me2, d3s1mh_, d3s1mi1, d3s1mi2, d3s1mj_, d3s1mk_, d3s1ml_
automated match to d1twff_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Domain for 3s1n:

Domain d3s1nf_: 3s1n F: [249278]
Other proteins in same PDB: d3s1na_, d3s1nb_, d3s1ne1, d3s1ne2, d3s1nh_, d3s1ni1, d3s1ni2, d3s1nj_, d3s1nk_, d3s1nl_
automated match to d1twff_
protein/DNA complex; protein/RNA complex; complexed with mg, zn

Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256073] (1 PDB entry)

Domain for 3rzo:

Domain d3rzof_: 3rzo F: [249248]
Other proteins in same PDB: d3rzoa_, d3rzob_, d3rzoe1, d3rzoe2, d3rzoh_, d3rzoi1, d3rzoi2, d3rzoj_, d3rzok_, d3rzol_
automated match to d1twff_
protein/DNA complex; protein/RNA complex; complexed with zn

Saccharomyces cerevisiae [TaxId:764097] [256220] (1 PDB entry)

Domain for 4c3i:

Domain d4c3if_: 4c3i F: [251334]
Other proteins in same PDB: d4c3ia_, d4c3ib_, d4c3ie1, d4c3ie2, d4c3ig1, d4c3ih_, d4c3ii1, d4c3ii2, d4c3ij_, d4c3ik_, d4c3il_, d4c3im_, d4c3in_
automated match to d4c2mf_
complexed with mg, mpd, so4, zn

Sus scrofa [TaxId:9825] [404498] (1 PDB entry)
- Domain for 7b7u:
  - Domain d7b7uf_: 7b7u F: [404499]
    Other proteins in same PDB: d7b7uh_, d7b7ui1, d7b7ui2, d7b7uj_, d7b7uk_, d7b7ul_
    automated match to d2nvqf_
    protein/RNA complex; complexed with zn

More info for Protein automated matches from a.143.1.2: RPB6

Timeline for Protein automated matches from a.143.1.2: RPB6:

Protein automated matches from a.143.1.2: RPB6 first appeared in SCOPe 2.04
Protein automated matches from a.143.1.2: RPB6 appears in SCOPe 2.06
Protein automated matches from a.143.1.2: RPB6 appears in the current release, SCOPe 2.08