SCOPe 2.08: Domain d3nuhb1: 3nuh B:402-561,B:733-784

Lineage for d3nuhb1 (3nuh B:402-561,B:733-784)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.78: DNA gyrase B, C-terminal domain-like [254116] (1 superfamily)
   2 domains: (1) toprim alpha/beta; (2) alpha+beta "tail" domain

4. Superfamily e.78.1: DNA gyrase B, C-terminal domain-like [254138] (1 family)
   Pfam PF00986; homologous to Type II DNA topoisomerase N-terminal half

5. Family e.78.1.1: DNA gyrase B, C-terminal domain [254182] (1 protein)

6. Protein DNA gyrase beta-prime domain [254406] (3 species)

7. Species Escherichia coli [TaxId:511693] [254844] (1 PDB entry)

8. Domain d3nuhb1: 3nuh B:402-561,B:733-784 [248034]
   Other proteins in same PDB: d3nuha_, d3nuhb2
   complexed with mg

Details for d3nuhb1

PDB Entry: 3nuh, 3.1 Å

PDB Description: A domain insertion in E. coli GyrB adopts a novel fold that plays a critical role in gyrase function

PDB Compounds: (B:) DNA gyrase subunit b

SCOPe Domain Sequences for d3nuhb1:

Sequence, based on SEQRES records:

>d3nuhb1 e.78.1.1 (B:402-561,B:733-784) DNA gyrase beta-prime domain {Escherichia coli [TaxId: 511693]}
glpgkladcqerdpalselylvegdsaggsakqgrnrknqailplkgkilnvekarfdkm
lssqevatlitalgcgigrdeynpdklryhsiiimtdadvdgshirtllltffyrqmpei
verghvyiaqpplykvkkgkqeqyikddeamdqyqisialXglsiqrykglgemnpeqlw
ettmdpesrrmlrvtvkdaiaadqlfttlmgda

Sequence, based on observed residues (ATOM records):

>d3nuhb1 e.78.1.1 (B:402-561,B:733-784) DNA gyrase beta-prime domain {Escherichia coli [TaxId: 511693]}
glpgkladcqerdpalselylvegdsaggsakqgrnrknqailplkglssqevatlital
gryhsiiimtdadvdgshirtllltffyrqmpeiverghvyiaqpplykvkkgkqeqyik
ddeamdqyqisialXglsiqrykglgemnpeqlwettmdpesrrmlrvtvkdaiaadqlf
ttlmgda

Timeline for d3nuhb1:

• d3nuhb1 first appeared in SCOPe 2.04
  
• d3nuhb1 appears in SCOPe 2.07