SCOPe 2.07: Domain d4kn5b1: 4kn5 B:2-231

Lineage for d4kn5b1 (4kn5 B:2-231)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
   core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

4. Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families)
   complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8

5. Family c.56.2.0: automated matches [191488] (1 protein)
   not a true family

6. Protein automated matches [190781] (45 species)
   not a true protein

7. Species Weissella paramesenteroides [TaxId:585506] [226681] (1 PDB entry)

8. Domain d4kn5b1: 4kn5 B:2-231 [224401]
   Other proteins in same PDB: d4kn5a2, d4kn5b2
   automated match to d3mmsa_
   complexed with edo, gol

Details for d4kn5b1

PDB Entry: 4kn5, 1.7 Å

PDB Description: crystal structure of a putative methylthioadenosine nucleosidase from weissella paramesenteroides atcc 33313 (target nysgrc-029342 )

PDB Compounds: (B:) Methylthioadenosine nucleosidase

SCOPe Domain Sequences for d4kn5b1:

Sequence, based on SEQRES records:

>d4kn5b1 c.56.2.0 (B:2-231) automated matches {Weissella paramesenteroides [TaxId: 585506]}
rygvinamaeekaalvdamidekkttiagklfhhgkighvdvvvvesgigkvasaltttl
litnfgvdavinsgsagalgtdlrigdiviadylayadadarafgyaygqvpqqparfka
dtdlsndlsesyekvtdarlvrglvvtsdsfiasneqkqtilthfpeaqsaemegasiaq
vanyfdvpfavvraisdnangeagmtfddfiveagqqsaqvlinffeaqa

Sequence, based on observed residues (ATOM records):

>d4kn5b1 c.56.2.0 (B:2-231) automated matches {Weissella paramesenteroides [TaxId: 585506]}
rygvinamaeekaalvdamidekkttiagklfhhgkighvdvvvvesgigkvasaltttl
litnfgvdavinsgsagalgtdlrigdiviadylayadadarafgyaygqvpqqparfka
dtdlsndlsesyekvtdarlvrglvvtsdsfiasneqkqtilthfpeaqsaemegasiaq
vanyfdvpfavvraisdnangfddfiveagqqsaqvlinffeaqa

Timeline for d4kn5b1:

• d4kn5b1 first appeared in SCOPe 2.03, called d4kn5b_
  
• d4kn5b1 appears in SCOPe 2.06
  
• d4kn5b1 appears in the current release, SCOPe 2.08