Lineage for d3vpdb1 (3vpd B:1-88)

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1360440Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
    3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
    possible rudiment form of Rossmann-fold domain
  4. 1360441Superfamily c.30.1: PreATP-grasp domain [52440] (9 families) (S)
    precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function
  5. 1360707Family c.30.1.0: automated matches [227183] (1 protein)
    not a true family
  6. 1360708Protein automated matches [226903] (19 species)
    not a true protein
  7. 1360770Species Thermus thermophilus [TaxId:274] [226603] (1 PDB entry)
  8. 1360772Domain d3vpdb1: 3vpd B:1-88 [217981]
    Other proteins in same PDB: d3vpda2, d3vpdb2
    automated match to d1uc8a1
    complexed with anp, bua, cit

Details for d3vpdb1

PDB Entry: 3vpd (more details), 1.95 Å

PDB Description: LysX from Thermus thermophilus complexed with AMP-PNP
PDB Compounds: (B:) Ribosomal protein S6 modification protein

SCOPe Domain Sequences for d3vpdb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3vpdb1 c.30.1.0 (B:1-88) automated matches {Thermus thermophilus [TaxId: 274]}

SCOPe Domain Coordinates for d3vpdb1:

Click to download the PDB-style file with coordinates for d3vpdb1.
(The format of our PDB-style files is described here.)

Timeline for d3vpdb1:

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