SCOP 1.59: Domain d1agdb1: 1agd B:

Lineage for d1agdb1 (1agd B:)

1. Root: SCOP 1.59

2. Class b: All beta proteins [48724] (110 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (15 superfamilies)

4. Superfamily b.1.1: Immunoglobulin [48726] (6 families)

5. Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (9 proteins)

6. Protein Class I MHC, beta2-microglobulin and alpha-3 domain [48945] (20 species)

7. Species Human (Homo sapiens), HLA-B0801 [TaxId:9606] [48951] (5 PDB entries)

8. Domain d1agdb1: 1agd B: [20742]
   Other proteins in same PDB: d1agda2

Details for d1agdb1

PDB Entry: 1agd, 2.05 Å

PDB Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggkkkykl-index peptide)

SCOP Domain Sequences for d1agdb1:

Sequence; same for both SEQRES and ATOM records:

>d1agdb1 b.1.1.2 (B:) Class I MHC, beta2-microglobulin and alpha-3 domain {Human (Homo sapiens), HLA-B0801}
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

Timeline for d1agdb1:

• d1agdb1 first appeared (with stable ids) in SCOP 1.55
  
• d1agdb1 appears in SCOP 1.57
  
• d1agdb1 appears in SCOP 1.61
  
• d1agdb1 appears in the current release, SCOPe 2.08, called d1agdb_