Lineage for d1agdb1 (1agd B:)

  1. Root: SCOP 1.55
  2. 6992Class b: All beta proteins [48724] (93 folds)
  3. 6993Fold b.1: Immunoglobulin-like beta-sandwich [48725] (14 superfamilies)
  4. 6994Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 8163Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (9 proteins)
  6. 8170Protein Class I MHC, beta2-microglobulin and alpha-3 domain [48945] (19 species)
  7. 8270Species Human (Homo sapiens), HLA-B0801 [TaxId:9606] [48951] (5 PDB entries)
  8. 8272Domain d1agdb1: 1agd B: [20742]
    Other proteins in same PDB: d1agda2

Details for d1agdb1

PDB Entry: 1agd (more details), 2.05 Å

PDB Description: antagonist hiv-1 gag peptides induce structural changes in hla b8-hiv-1 gag peptide (ggkkkykl-index peptide)
PDB Compounds: (B:)

SCOP Domain Sequences for d1agdb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1agdb1 b.1.1.2 (B:) Class I MHC, beta2-microglobulin and alpha-3 domain {Human (Homo sapiens), HLA-B0801}
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

SCOP Domain Coordinates for d1agdb1:

Click to download the PDB-style file with coordinates for d1agdb1.
(The format of our PDB-style files is described here.)

Timeline for d1agdb1: