SCOPe 2.06: Domain d3ay6a1: 3ay6 A:1-261

Lineage for d3ay6a1 (3ay6 A:1-261)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein automated matches [190085] (51 species)
   not a true protein

7. Species Bacillus megaterium [TaxId:1404] [195340] (5 PDB entries)

8. Domain d3ay6a1: 3ay6 A:1-261 [195341]
   Other proteins in same PDB: d3ay6a2, d3ay6b2, d3ay6c2, d3ay6d2
   automated match to d1gcoa_
   complexed with bgc, cl, nai; mutant

Details for d3ay6a1

PDB Entry: 3ay6, 2.1 Å

PDB Description: crystal structure of bacillus megaterium glucose dehydrogenase 4 a258f mutant in complex with nadh and d-glucose

PDB Compounds: (A:) Glucose 1-dehydrogenase 4

SCOPe Domain Sequences for d3ay6a1:

Sequence; same for both SEQRES and ATOM records:

>d3ay6a1 c.2.1.2 (A:1-261) automated matches {Bacillus megaterium [TaxId: 1404]}
mytdlkdkvvvitggstglgramavrfgqeeakvvinyynneeealdakkeveeaggqai
ivqgdvtkeedvvnlvqtaikefgtldvminnagvenpvpshelsldnwnkvidtnltga
flgsreaikyfvendikgnvinmssvhemipwplfvhyaaskggmklmtetlaleyapkg
irvnnigpgamntpinaekfadpvqradvesmipmgyigkpeevaavaaflassqasyvt
gitlfadggmtkypsfqfgrg

Timeline for d3ay6a1:

• d3ay6a1 first appeared in SCOPe 2.02, called d3ay6a_
  
• d3ay6a1 was called d3ay6a_ in SCOPe 2.05
  
• d3ay6a1 appears in SCOPe 2.07
  
• d3ay6a1 appears in the current release, SCOPe 2.08