SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.116: alpha/beta knot [75216] (1 superfamily)
core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
Superfamily c.116.1: alpha/beta knot [75217] (9 families)
known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
all known members have dimeric structures
Family c.116.1.0: automated matches [191557] (1 protein)
not a true family
Protein automated matches [190961] (13 species)
not a true protein

Species:

Anaplasma phagocytophilum [TaxId:212042] [232723] (2 PDB entries)
1. Domains for 3knu:
  1. Domain d3knua_: 3knu A: [232724]
    automated match to d3quva_
  2. Domain d3knub_: 3knu B: [232725]
    automated match to d3quva_
  3. Domain d3knuc_: 3knu C: [232726]
    automated match to d3quva_
  4. Domain d3knud_: 3knu D: [232727]
    automated match to d3quva_
2. Domain for 4ig6:
  - Domain d4ig6a_: 4ig6 A: [252618]
    automated match to d3knub_
    protein/RNA complex; complexed with cl, sah
Archaeoglobus fulgidus [TaxId:2234] [255990] (1 PDB entry)
- Domain for 3o7b:
  - Domain d3o7ba_: 3o7b A: [248124]
    automated match to d3bbda1
    complexed with sah, tyr
Bacillus anthracis [TaxId:261594] [257590] (1 PDB entry)
- Domains for 4pzk:
  1. Domain d4pzka_: 4pzk A: [257591]
    automated match to d3l8ub_
    complexed with sah
  2. Domain d4pzkb_: 4pzk B: [257592]
    automated match to d3l8ub_
    complexed with sah
Bartonella henselae [TaxId:38323] [225732] (1 PDB entry)
- Domains for 3ief:
  1. Domain d3iefa_: 3ief A: [211603]
    automated match to d3ky7a_
  2. Domain d3iefb_: 3ief B: [211604]
    automated match to d3ky7a_
Burkholderia phymatum [TaxId:391038] [256282] (2 PDB entries)
1. Domains for 4h3y:
  1. Domain d4h3ya_: 4h3y A: [252374]
    automated match to d1uala_
    complexed with cl, sah
  2. Domain d4h3yb_: 4h3y B: [252375]
    automated match to d1uala_
    complexed with cl, sah
2. Domains for 4h3z:
  1. Domain d4h3za_: 4h3z A: [252376]
    automated match to d1uala_
    complexed with cl, sah
  2. Domain d4h3zb_: 4h3z B: [252377]
    automated match to d1uala_
    complexed with cl, sah
Burkholderia pseudomallei [TaxId:320372] [197042] (1 PDB entry)
- Domains for 4kgn:
  1. Domain d4kgna_: 4kgn A: [197043]
    automated match to d3e5ya_
    complexed with cl, sah
  2. Domain d4kgnb_: 4kgn B: [197044]
    automated match to d3e5ya_
    complexed with cl, sah
Burkholderia pseudomallei [TaxId:425067] [188581] (2 PDB entries)
1. Domains for 3e5y:
  1. Domain d3e5ya_: 3e5y A: [174682]
    automated match to d1j85a_
  2. Domain d3e5yb_: 3e5y B: [174683]
    automated match to d1j85a_
2. Domains for 4kgn:
  1. Domain d4kgnc_: 4kgn C: [202845]
    automated match to d3e5ya_
    complexed with cl, sah
  2. Domain d4kgnd_: 4kgn D: [202846]
    automated match to d3e5ya_
    complexed with cl, sah
  3. Domain d4kgne_: 4kgn E: [202847]
    automated match to d3e5ya_
    complexed with cl, sah
  4. Domain d4kgnf_: 4kgn F: [202848]
    automated match to d3e5ya_
    complexed with cl, sah
  5. Domain d4kgng_: 4kgn G: [202849]
    automated match to d3e5ya_
    complexed with cl, sah
  6. Domain d4kgnh_: 4kgn H: [202850]
    automated match to d3e5ya_
    complexed with cl, sah
Escherichia coli K-12 [TaxId:83333] [234948] (2 PDB entries)
1. Domains for 4jak:
  1. Domain d4jaka_: 4jak A: [234949]
    automated match to d4kgnd_
  2. Domain d4jakb_: 4jak B: [234950]
    automated match to d4kgnd_
2. Domains for 4jal:
  1. Domain d4jala_: 4jal A: [237816]
    automated match to d4jaka_
    complexed with edo, epe, sah
  2. Domain d4jalb_: 4jal B: [237817]
    automated match to d4jaka_
    complexed with edo, epe, sah
Methanocaldococcus jannaschii [TaxId:2190] [189685] (2 PDB entries)
1. Domain for 3ai9:
  - Domain d3ai9x_: 3ai9 X: [172203]
    automated match to d2qmma1
    complexed with mg, sam
2. Domains for 3aia:
  1. Domain d3aiaa_: 3aia A: [172204]
    automated match to d2qmma1
    complexed with pbl, sam
  2. Domain d3aiab_: 3aia B: [172205]
    automated match to d2qmma1
    complexed with pbl, sam
Mycobacterium abscessus [TaxId:561007] [226092] (1 PDB entry)
- Domains for 3quv:
  1. Domain d3quva_: 3quv A: [215428]
    automated match to d1oy5a_
    complexed with edo
  2. Domain d3quvb_: 3quv B: [215429]
    automated match to d1oy5a_
    complexed with edo
Pyrococcus horikoshii [TaxId:53953] [255719] (1 PDB entry)
- Domains for 2yy8:
  1. Domain d2yy8a_: 2yy8 A: [244880]
    automated match to d2o3aa1
    protein/RNA complex; complexed with mta, sam
  2. Domain d2yy8b_: 2yy8 B: [244881]
    automated match to d2o3aa1
    protein/RNA complex; complexed with mta, sam
Staphylococcus aureus [TaxId:282458] [189168] (1 PDB entry)
- Domain for 3ky7:
  - Domain d3ky7a_: 3ky7 A: [179805]
    automated match to d1uaja_
Streptococcus mutans [TaxId:210007] [189590] (1 PDB entry)
- Domains for 3l8u:
  1. Domain d3l8ua_: 3l8u A: [180093]
    automated match to d1j85a_
  2. Domain d3l8ub_: 3l8u B: [180094]
    automated match to d1j85a_

More info for Protein automated matches from c.116.1.0: automated matches

Timeline for Protein automated matches from c.116.1.0: automated matches:

Protein automated matches from c.116.1.0: automated matches first appeared in SCOPe 2.01
Protein automated matches from c.116.1.0: automated matches appears in SCOPe 2.03
Protein automated matches from c.116.1.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.116.1.0: automated matches appears in the current release, SCOPe 2.08