SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class f: Membrane and cell surface proteins and peptides [56835] (60 folds)
Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
Pfam PF13853. Phylogeny described in PubMed 12761335
Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
Protein automated matches [190122] (8 species)
not a true protein

Species:

Halobacterium salinarium [TaxId:2242] [188662] (3 PDB entries)
1. Domain for 2jaf:
  - Domain d2jafa_: 2jaf A: [242207]
    automated match to d1e12a_
    complexed with bog, cl, plm, ret
2. Domain for 2jag:
  - Domain d2jaga_: 2jag A: [242208]
    automated match to d1e12a_
    complexed with bog, cl, plm, ret
3. Domain for 2zfe:
  - Domain d2zfea_: 2zfe A: [171193]
    automated match to d1cwqa_
    complexed with l1p, l2p, l3p, ret, xe
Halobacterium salinarum [TaxId:2242] [186845] (18 PDB entries)
1. Domain for 1x0i:
  - Domain d1x0i1_: 1x0i 1: [121548]
    automated match to d1cwqa_
    complexed with l2p, l3p, ret, so4
2. Domain for 1x0k:
  - Domain d1x0k1_: 1x0k 1: [121549]
    automated match to d1cwqa_
    complexed with l2p, l3p, ret
3. Domain for 1x0s:
  - Domain d1x0sa_: 1x0s A: [121572]
    automated match to d1cwqa_
    complexed with l2p, l3p, ret, so4
4. Domain for 1xji:
  - Domain d1xjia_: 1xji A: [122034]
    automated match to d1cwqa_
    complexed with c14, cps, d10, d12, oct, ret
5. Domain for 2i1x:
  - Domain d2i1xa_: 2i1x A: [165371]
    automated match to d1cwqa_
    complexed with li1, ret, squ; mutant
6. Domain for 2i20:
  - Domain d2i20a_: 2i20 A: [165372]
    automated match to d1cwqa_
    complexed with li1, ret, squ; mutant
7. Domain for 2i21:
  - Domain d2i21a_: 2i21 A: [165373]
    automated match to d1cwqa_
    complexed with li1, ret, squ; mutant
8. Domain for 2wjk:
  - Domain d2wjka_: 2wjk A: [169378]
    automated match to d1cwqa_
    complexed with li1, ret; mutant
9. Domain for 2wjl:
  - Domain d2wjla_: 2wjl A: [169379]
    automated match to d1cwqa_
    complexed with ret; mutant
10. Domain for 2zzl:
  - Domain d2zzla_: 2zzl A: [171614]
    automated match to d1cwqa_
    complexed with l1p, l2p, l3p, ret, sog
11. Domain for 3mbv:
  - Domain d3mbva_: 3mbv A: [180998]
    automated match to d1cwqa_
    complexed with bxc, ret
12. Domain for 3ns0:
  - Domain d3ns0a_: 3ns0 A: [182504]
    automated match to d1cwqa_
    complexed with li1, ret
13. Domain for 3nsb:
  - Domain d3nsba_: 3nsb A: [182506]
    automated match to d1cwqa_
    complexed with li1, ret
14. Domains for 4hwl:
  1. Domain d4hwla_: 4hwl A: [192665]
    automated match to d1r84a_
    complexed with gol, hex, hp6, ret
  2. Domain d4hwlb_: 4hwl B: [192667]
    automated match to d1r84a_
    complexed with gol, hex, hp6, ret
15. Domains for 4hyx:
  1. Domain d4hyxa_: 4hyx A: [192664]
    automated match to d1r84a_
    complexed with c14, d10, gol, hex, oct, ret
  2. Domain d4hyxb_: 4hyx B: [192666]
    automated match to d1r84a_
    complexed with c14, d10, gol, hex, oct, ret
16. Domain for 5ahy:
  - Domain d5ahya_: 5ahy A: [271606]
    automated match to d2jafa_
    complexed with bog, cl, ret
17. Domain for 5ahz:
  - Domain d5ahza_: 5ahz A: [271605]
    automated match to d2jafa_
    complexed with bog, br, ret
18. Domain for 5g36:
  - Domain d5g36a_: 5g36 A: [321903]
    automated match to d5ahza_
    complexed with bog, cl, ret
Halobacterium salinarum [TaxId:478009] [311987] (1 PDB entry)
- Domain for 4y9h:
  - Domain d4y9ha_: 4y9h A: [311988]
    automated match to d1brrb_
    complexed with d10, d12, dd9, hp6, po4, r16, ret
Halobacterium salinarum [TaxId:64091] [270103] (7 PDB entries)
1. Domain for 4x31:
  - Domain d4x31a_: 4x31 A: [270104]
    automated match to d1cwqa_
    complexed with li1, ret
2. Domain for 5zil:
  - Domain d5zila_: 5zil A: [358735]
    automated match to d4x31a_
    complexed with l2p, ret
3. Domain for 6rmk:
  - Domain d6rmka_: 6rmk A: [371572]
    automated match to d1cwqa_
    complexed with ret
4. Domain for 6rnj:
  - Domain d6rnja_: 6rnj A: [371703]
    automated match to d4x31a_
    complexed with ret
5. Domain for 6rph:
  - Domain d6rpha_: 6rph A: [371671]
    automated match to d1r84a_
    complexed with ret
6. Domain for 6rqo:
  - Domain d6rqoa_: 6rqo A: [371662]
    automated match to d1qm8a_
    complexed with ret
7. Domain for 6rqp:
  - Domain d6rqpa_: 6rqp A: [371593]
    automated match to d4x31a_
    complexed with li1, olc, ret
Halobacterium sp. [TaxId:29285] [188058] (3 PDB entries)
1. Domains for 1vgo:
  1. Domain d1vgoa_: 1vgo A: [161863]
    automated match to d1uaza_
    complexed with bng, ret, so4
  2. Domain d1vgob_: 1vgo B: [161864]
    automated match to d1uaza_
    complexed with bng, ret, so4
2. Domain for 2ei4:
  - Domain d2ei4a_: 2ei4 A: [164046]
    automated match to d1uaza_
    complexed with 22b, glc, l2p, ret
3. Domains for 2z55:
  1. Domain d2z55a_: 2z55 A: [171054]
    automated match to d1uaza_
    complexed with 22b, l2p, ret
  2. Domain d2z55b_: 2z55 B: [171055]
    automated match to d1uaza_
    complexed with 22b, l2p, ret
  3. Domain d2z55d_: 2z55 D: [171056]
    automated match to d1uaza_
    complexed with 22b, l2p, ret
  4. Domain d2z55e_: 2z55 E: [171057]
    automated match to d1uaza_
    complexed with 22b, l2p, ret
Halobacterium sp. [TaxId:64091] [193950] (1 PDB entry)
- Domain for 4fpd:
  - Domain d4fpda_: 4fpd A: [193951]
    automated match to d1cwqa_
    complexed with cl, li1, ret
Halorubrum sodomense [TaxId:35743] [375306] (5 PDB entries)
1. Domain for 6gux:
  - Domain d6guxa_: 6gux A: [375342]
    automated match to d2z55a_
    complexed with ca, cl, d12, dd9, na, r16, ret
2. Domain for 6guy:
  - Domain d6guya_: 6guy A: [375307]
    automated match to d2z55a_
    complexed with ca, cl, dd9, na, r16, ret
3. Domain for 6guz:
  - Domain d6guza_: 6guz A: [375321]
    automated match to d2z55a_
    complexed with ca, cl, d10, dd9, na, r16, ret
4. Domain for 6s63:
  - Domain d6s63a_: 6s63 A: [391467]
    automated match to d2z55a_
    complexed with ca, cl, dd9, na, r16, ret
5. Domain for 6s6c:
  - Domain d6s6ca_: 6s6c A: [391459]
    automated match to d2z55a_
    complexed with ca, cl, d12, dd9, na, r16, ret
Nostoc sp. [TaxId:103690] [258526] (1 PDB entry)
- Domains for 4tl3:
  1. Domain d4tl3a_: 4tl3 A: [258527]
    automated match to d1xioa_
    complexed with pee, ret; mutant
  2. Domain d4tl3b_: 4tl3 B: [258528]
    automated match to d1xioa_
    complexed with pee, ret; mutant

More info for Protein automated matches from f.13.1.1: Bacteriorhodopsin-like

Timeline for Protein automated matches from f.13.1.1: Bacteriorhodopsin-like:

Protein automated matches from f.13.1.1: Bacteriorhodopsin-like first appeared in SCOPe 2.01
Protein automated matches from f.13.1.1: Bacteriorhodopsin-like appears in SCOPe 2.06
Protein automated matches from f.13.1.1: Bacteriorhodopsin-like appears in the current release, SCOPe 2.08