Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 969026Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families) (S)
  5. 969327Family c.1.4.0: automated matches [191310] (1 protein)
    not a true family
  6. 969328Protein automated matches [190048] (11 species)
    not a true protein

Species:

  1. 969329Aerococcus viridans [TaxId:1377] [187639] (5 PDB entries)
    1. Domains for 2du2:
      1. 969338Domain d2du2a_: 2du2 A: [163695]
        automated match to d1tb3a1
        complexed with fmn
      2. 969339Domain d2du2b_: 2du2 B: [163696]
        automated match to d1tb3a1
        complexed with fmn
      3. 969340Domain d2du2c_: 2du2 C: [163697]
        automated match to d1tb3a1
        complexed with fmn
      4. 969341Domain d2du2d_: 2du2 D: [163698]
        automated match to d1tb3a1
        complexed with fmn
    2. Domains for 2e77:
      1. 969334Domain d2e77a_: 2e77 A: [163884]
        automated match to d1tb3a1
        complexed with fmn, pyr
      2. 969335Domain d2e77b_: 2e77 B: [163885]
        automated match to d1tb3a1
        complexed with fmn, pyr
      3. 969336Domain d2e77c_: 2e77 C: [163886]
        automated match to d1tb3a1
        complexed with fmn, pyr
      4. 969337Domain d2e77d_: 2e77 D: [163887]
        automated match to d1tb3a1
        complexed with fmn, pyr
    3. Domains for 2j6x:
      1. 969342Domain d2j6xa_: 2j6x A: [165919]
        automated match to d1tb3a1
        complexed with fmn, zn
      2. 969343Domain d2j6xb_: 2j6x B: [165920]
        automated match to d1tb3a1
        complexed with fmn, zn
      3. 969344Domain d2j6xc_: 2j6x C: [165921]
        automated match to d1tb3a1
        complexed with fmn, zn
      4. 969345Domain d2j6xd_: 2j6x D: [165922]
        automated match to d1tb3a1
        complexed with fmn, zn
      5. 969346Domain d2j6xe_: 2j6x E: [165923]
        automated match to d1tb3a1
        complexed with fmn, zn
      6. 969347Domain d2j6xf_: 2j6x F: [165924]
        automated match to d1tb3a1
        complexed with fmn, zn
      7. 969348Domain d2j6xg_: 2j6x G: [165925]
        automated match to d1tb3a1
        complexed with fmn, zn
      8. 969349Domain d2j6xh_: 2j6x H: [165926]
        automated match to d1tb3a1
        complexed with fmn, zn
    4. Domains for 2nli:
      1. 969330Domain d2nlia_: 2nli A: [166290]
        automated match to d1tb3a1
        complexed with fmn, lac, peo
      2. 969331Domain d2nlib_: 2nli B: [166291]
        automated match to d1tb3a1
        complexed with fmn, lac, peo
    5. Domains for 2zfa:
      1. 969332Domain d2zfaa_: 2zfa A: [171191]
        automated match to d1tb3a1
        complexed with edo, fmn
      2. 969333Domain d2zfab_: 2zfa B: [171192]
        automated match to d1tb3a1
        complexed with edo, fmn
  2. 969350Burkholderia pseudomallei [TaxId:28450] [188818] (1 PDB entry)
  3. 969353Human (Homo sapiens) [TaxId:9606] [189110] (1 PDB entry)
  4. 969358Norway rat (Rattus norvegicus) [TaxId:10116] [186769] (1 PDB entry)
  5. 969366Pseudomonas putida [TaxId:303] [187793] (12 PDB entries)
    1. Domain for 2h8x:
    2. Domain for 2h8z:
    3. Domain for 2h90:
    4. Domain for 3l5l:
    5. Domain for 3l5m:
    6. Domain for 3l65:
    7. Domain for 3l66:
    8. Domain for 3l67:
    9. Domain for 3l68:
    10. Domain for 3n14:
    11. Domain for 3n16:
    12. Domains for 3n19:
      1. 969377Domain d3n19b_: 3n19 B: [181772]
        automated match to d1z41a1
        complexed with fnr, so4
      2. 969378Domain d3n19d_: 3n19 D: [181773]
        automated match to d1z41a1
        complexed with fnr, so4
  6. 969380Shewanella oneidensis [TaxId:211586] [187764] (3 PDB entries)
    1. Domain for 2gq8:
    2. Domain for 2gq9:
    3. Domain for 2gqa:
  7. 969384Shewanella oneidensis [TaxId:70863] [187761] (1 PDB entry)
  8. 969386Thermoanaerobacter pseudethanolicus [TaxId:340099] [189163] (2 PDB entries)
    1. Domains for 3kru:
      1. 969387Domain d3krua_: 3kru A: [179624]
        automated match to d1z41a1
        complexed with act, fmn
      2. 969388Domain d3krub_: 3kru B: [179625]
        automated match to d1z41a1
        complexed with act, fmn
      3. 969389Domain d3kruc_: 3kru C: [179626]
        automated match to d1z41a1
        complexed with act, fmn
      4. 969390Domain d3krud_: 3kru D: [179627]
        automated match to d1z41a1
        complexed with act, fmn
    2. Domains for 3krz:
      1. 969391Domain d3krza_: 3krz A: [179635]
        automated match to d1z41a1
        complexed with fmn, txd
      2. 969392Domain d3krzb_: 3krz B: [179636]
        automated match to d1z41a1
        complexed with fmn, txd
      3. 969393Domain d3krzc_: 3krz C: [179637]
        automated match to d1z41a1
        complexed with fmn, txd
      4. 969394Domain d3krzd_: 3krz D: [179638]
        automated match to d1z41a1
        complexed with fmn, txd
  9. 969395Thermus scotoductus [TaxId:37636] [189238] (2 PDB entries)
    1. Domains for 3hf3:
      1. 969400Domain d3hf3a_: 3hf3 A: [177456]
        automated match to d1z41a1
        complexed with fmn, so4
      2. 969401Domain d3hf3b_: 3hf3 B: [177457]
        automated match to d1z41a1
        complexed with fmn, so4
      3. 969402Domain d3hf3c_: 3hf3 C: [177458]
        automated match to d1z41a1
        complexed with fmn, so4
      4. 969403Domain d3hf3d_: 3hf3 D: [177459]
        automated match to d1z41a1
        complexed with fmn, so4
    2. Domains for 3hgj:
      1. 969396Domain d3hgja_: 3hgj A: [177543]
        automated match to d1z41a1
        complexed with fmn, hba
      2. 969397Domain d3hgjb_: 3hgj B: [177544]
        automated match to d1z41a1
        complexed with fmn, hba
      3. 969398Domain d3hgjc_: 3hgj C: [177545]
        automated match to d1z41a1
        complexed with fmn, hba
      4. 969399Domain d3hgjd_: 3hgj D: [177546]
        automated match to d1z41a1
        complexed with fmn, hba
  10. 969404Trypanosoma cruzi [TaxId:5693] [189890] (2 PDB entries)
    1. Domains for 3aty:
      1. 969405Domain d3atya_: 3aty A: [172335]
        automated match to d1icpa_
        complexed with fmn
      2. 969406Domain d3atyb_: 3aty B: [172336]
        automated match to d1icpa_
        complexed with fmn
    2. Domains for 3atz:
      1. 969407Domain d3atza_: 3atz A: [172337]
        automated match to d1icpa_
        complexed with fmn, hba
      2. 969408Domain d3atzb_: 3atz B: [172338]
        automated match to d1icpa_
        complexed with fmn, hba
      3. 969409Domain d3atzc_: 3atz C: [172339]
        automated match to d1icpa_
        complexed with fmn, hba
      4. 969410Domain d3atzd_: 3atz D: [172340]
        automated match to d1icpa_
        complexed with fmn, hba
  11. 969411Trypanosome (Trypanosoma brucei) [TaxId:5691] [186962] (1 PDB entry)

More info for Protein automated matches from c.1.4.0: automated matches

Timeline for Protein automated matches from c.1.4.0: automated matches: