SCOPe 2.02: Domain d3h7ka_: 3h7k A:

Lineage for d3h7ka_ (3h7k A:)

1. Root: SCOPe 2.02

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (3 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein automated matches [190353] (1 species)
   not a true protein

7. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187181] (3 PDB entries)

8. Domain d3h7ka_: 3h7k A: [177306]
   automated match to d1vkpa_
   complexed with 1pe, cl, mg, na

Details for d3h7ka_

PDB Entry: 3h7k, 1.84 Å

PDB Description: crystal structure of arabidopsis thaliana agmatine deiminase complexed with a covalently bound reaction intermediate

PDB Compounds: (A:) agmatine deiminase

SCOPe Domain Sequences for d3h7ka_:

Sequence, based on SEQRES records:

>d3h7ka_ d.126.1.6 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
seesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihxitqqqpaept

Sequence, based on observed residues (ATOM records):

>d3h7ka_ d.126.1.6 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
seesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrniagidwnfnawggan
dgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnph
mskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpq
yersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaa
syvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihxitq
qqpaept

Timeline for d3h7ka_:

• d3h7ka_ first appeared in SCOPe 2.01
  
• d3h7ka_ appears in SCOPe 2.03
  
• d3h7ka_ appears in the current release, SCOPe 2.08, called d3h7ka1