SCOPe 2.06: Domain d3d6va1: 3d6v A:2-306

Lineage for d3d6va1 (3d6v A:2-306)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (9 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:2190] [188187] (8 PDB entries)

8. Domain d3d6va1: 3d6v A:2-306 [173724]
   Other proteins in same PDB: d3d6va2
   automated match to d1j1ua_
   complexed with bme, tfq

Details for d3d6va1

PDB Entry: 3d6v, 2.2 Å

PDB Description: crystal structure of 4-(trifluoromethyldiazirinyl)phenylalanyl-trna synthetase

PDB Compounds: (A:) Tyrosyl-tRNA synthetase

SCOPe Domain Sequences for d3d6va1:

Sequence; same for both SEQRES and ATOM records:

>d3d6va1 c.26.1.1 (A:2-306) automated matches {Methanocaldococcus jannaschii [TaxId: 2190]}
defemikrntseiiseeelrevlkkdeksaiigfepsgkihlghylqikkmidlqnagfd
iiilladlfaylnqkgeldeirkigdynkkvfeamglkakyvygssfmldkdytlnvyrl
alkttlkrarrsmeliaredenpkvaeviypimqvnplhyegvdvavggmeqrkihmlar
ellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnpi
meiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikilep
irkrl

Timeline for d3d6va1:

• d3d6va1 first appeared in SCOPe 2.01, called d3d6va_
  
• d3d6va1 was called d3d6va_ in SCOPe 2.05
  
• d3d6va1 appears in SCOPe 2.07
  
• d3d6va1 appears in the current release, SCOPe 2.08