SCOPe 2.08: Domain d2ybxb1: 2ybx B:35-405

Lineage for d2ybxb1 (2ybx B:35-405)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.143: SAICAR synthase-like [56103] (1 superfamily)
   consists of two alpha+beta subdomains

4. Superfamily d.143.1: SAICAR synthase-like [56104] (4 families)
   shares functional and structural similarities with the ATP-grasp fold and protein kinase superfamilies

5. Family d.143.1.2: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta [56108] (2 proteins)

6. Protein automated matches [190661] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187755] (34 PDB entries)

8. Domain d2ybxb1: 2ybx B:35-405 [170732]
   Other proteins in same PDB: d2ybxa2, d2ybxb2
   automated match to d1bo1a_
   complexed with po4

Details for d2ybxb1

PDB Entry: 2ybx, 2.56 Å

PDB Description: Crystal Structure of Human Phosphatidylinositol-5-phosphate 4-kinase type-2 alpha

PDB Compounds: (B:) phosphatidylinositol-5-phosphate 4-kinase type-2 alpha

SCOPe Domain Sequences for d2ybxb1:

Sequence, based on SEQRES records:

>d2ybxb1 d.143.1.2 (B:35-405) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dpllsvlmwgvnhsinelshvqipvmlmpddfkayskikvdnhlfnkenmpshfkfkeyc
pmvfrnlrerfgiddqdfqnsltrsaplpndsqarsgarfhtsydkryiiktitsedvae
mhnilkkyhqyivechgitllpqflgmyrlnvdgveiyvivtrnvfshrlsvyrkydlkg
stvareasdkekakelptlkdndfinegqkiyiddnnkkvfleklkkdveflaqlklmdy
sllvgihdveraeqeeveceendgeeegesdgthpvgtppdspgntlnsspplapgefdp
nidvygikchensprkevyfmaiidilthydakkkaahaaktvkhgagaeistvnpeqys
krfldfighil

Sequence, based on observed residues (ATOM records):

>d2ybxb1 d.143.1.2 (B:35-405) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dpllsvlmwgvnhsinelshvqipvmlmpddfkayskikvdnhlfnkenmpshfkfkeyc
pmvfrnlrerfgiddqdfqnsltrsaplpndssgarfhtsydkryiiktitsedvaemhn
ilkkyhqyivechgitllpqflgmyrlnvdgveiyvivtrnvfshrlsvyrkydlkgstv
areasdkekakelptlkdndfinegqkiyiddnnkkvfleklkkdveflaqlklmdysll
vgihdveraapgefdpnidvygikchensprkevyfmaiidilthydavnpeqyskrfld
fighil

Timeline for d2ybxb1:

• d2ybxb1 first appeared in SCOPe 2.01, called d2ybxb_
  
• d2ybxb1 appears in SCOPe 2.07