SCOPe 2.05: Domain d1ywkb_: 1ywk B:

Lineage for d1ywkb_ (1ywk B:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.1: RmlC-like cupins [51182] (25 families)

5. Family b.82.1.13: KduI-like [110318] (1 protein)
   Pfam PF04962: duplication: consists of two germin-like domains

6. Protein 5-keto-4-deoxyuronate isomerase KduI [110319] (2 species)

7. Species Enterococcus faecalis [TaxId:1351] [141602] (1 PDB entry)
   Uniprot Q838L9 1-260

8. Domain d1ywkb_: 1ywk B: [124156]
   automated match to d1ywka1

Details for d1ywkb_

PDB Entry: 1ywk, 2.95 Å

PDB Description: crystal structure of 4-deoxy-1-threo-5-hexosulose-uronate ketol- isomerase from enterococcus faecalis

PDB Compounds: (B:) 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1

SCOPe Domain Sequences for d1ywkb_:

Sequence, based on SEQRES records:

>d1ywkb_ b.82.1.13 (B:) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
lqnmetrythspadirhysteqlrdeflvekvfipgaisltythndrmifggvtptteel
eiildkelgvdyflerrelgviniggpgfieidgaketmkkqdgyyigketkhvrfssen
pdnpakfyiscvpahhkypnvkisideitpmetgdpltlnqrkiyqyihpnvcescqlqm
gytilepgsawntmpchtherrmeayvyfdmeedtrifhmmgkpdetkhlvmsneqaais
pswsihsgvgtsnysfiwamcge

Sequence, based on observed residues (ATOM records):

>d1ywkb_ b.82.1.13 (B:) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}
lqnmetrythspadirhysteqlrdeflvekvfipgaisltythndrmifggvtptteel
eiildkelgvdyflerrelgviniggpgfieidgaketmkkqdgyyigketkhvrfssen
pdnpakfyiscvpahhkypnvkisideitpmetgdpltlnqrkiyqyihpnvcescqlqm
gytilepgsawntmeayvyfdmeedtrifhmmgkpdetkhlvmsneqaaispswsihsgv
gtsnysfiwamcge

Timeline for d1ywkb_:

• d1ywkb_ first appeared in SCOP 1.73, called d1ywkb1
  
• d1ywkb_ appears in SCOPe 2.04
  
• d1ywkb_ is called d1ywkb2 in SCOPe 2.06
  
• d1ywkb_ appears in the current release, SCOPe 2.08, called d1ywkb2