SCOPe 2.08: Family d.278.1.2: TRAPP components

Lineage for Family d.278.1.2: TRAPP components

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.278: Ligand-binding domain in the NO signalling and Golgi transport [111125] (1 superfamily)
   an N-terminal helical bundle and the C-terminal alpha-beta(2)-alpha-beta(2) subdomain enclose a ligand-binding cavity

4. Superfamily d.278.1: Ligand-binding domain in the NO signalling and Golgi transport [111126] (4 families)

5. Family d.278.1.2: TRAPP components [118076] (3 proteins)
   Pfam PF04051; form homo- and hetero-dimers with the first two helices of one subunit complementing the fold of the other subunit to the H-NOX domain fold

Proteins:

1. Trafficking protein particle complex subunit 3, Bet3 homolog [118077] (1 species)
   covalently linked long fatty acid occupies the ligand-binding cavity

   • Species Mouse (Mus musculus) [TaxId:10090] [118078] (3 PDB entries)
     Uniprot O55013 9-173

2. TRAPPC5, similar to trafficking protein particle complex 5 [160687] (1 species)

   • Species Zebrafish (Danio rerio) [TaxId:7955] [160688] (1 PDB entry)
     Uniprot Q6DGL5 21-188

3. automated matches [190535] (2 species)
   not a true protein

   1. Species Human (Homo sapiens) [TaxId:9606] [187502] (4 PDB entries)

   2. Species Mouse (Mus musculus) [TaxId:10090] [187891] (4 PDB entries)

More info for Family d.278.1.2: TRAPP components

Timeline for Family d.278.1.2: TRAPP components:

• Family d.278.1.2: TRAPP components first appeared in SCOP 1.71
  
• Family d.278.1.2: TRAPP components appears in SCOPe 2.07