SCOPe 2.07: Species: Methanococcus jannaschii [TaxId: 2190]

Lineage for Species: Methanococcus jannaschii [TaxId: 2190]

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)
Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
most similar to eukaryotic ODC
Species Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
Uniprot Q58497

PDB entries in Species: Methanococcus jannaschii [TaxId: 2190]:

Domain(s) for 1tuf:
1. Domain d1tufa2: 1tuf A:50-313 [107336]
  Other proteins in same PDB: d1tufa1, d1tufb1
  Structural genomics target
  complexed with az1
2. Domain d1tufb2: 1tuf B:50-313 [107338]
  Other proteins in same PDB: d1tufa1, d1tufb1
  Structural genomics target
  complexed with az1
Domain(s) for 1twi:
1. Domain d1twia2: 1twi A:50-313 [107400]
  Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
  Structural genomics target
  complexed with lys, mg, plp
2. Domain d1twib2: 1twi B:50-313 [107402]
  Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
  Structural genomics target
  complexed with lys, mg, plp
3. Domain d1twic2: 1twi C:50-313 [107404]
  Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
  Structural genomics target
  complexed with lys, mg, plp
4. Domain d1twid2: 1twi D:50-313 [107406]
  Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
  Structural genomics target
  complexed with lys, mg, plp

More info for Species Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA

Timeline for Species Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA:

Species Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA first appeared in SCOP 1.69, called Species Archaeon Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA
Species Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA appears in SCOPe 2.06
Species Methanococcus jannaschii [TaxId:2190] from c.1.6.1 Diaminopimelate decarboxylase LysA appears in the current release, SCOPe 2.08