Lineage for d1q8ia1 (1q8i A:2-389)
- Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds) 
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the restSuperfamily c.55.3: Ribonuclease H-like [53098] (15 families) 
consists of one domain of this fold
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
contains Pfam PF00929
Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
elaborated with additional structures and the N-terminal subdomain
Species Escherichia coli [TaxId:562] [102482] (1 PDB entry)
DNA polymerase II, additional N-terminal subdomain has an OB-fold with a ferredoxin-like fold insertion
Domain d1q8ia1: 1q8i A:2-389 [96208]
Other proteins in same PDB: d1q8ia2
Details for d1q8ia1
PDB Entry: 1q8i (more details), 2 Å
PDB Description: crystal structure of escherichia coli dna polymerase ii
PDB Compounds: (A:) DNA polymerase IISCOPe Domain Sequences for d1q8ia1:
Sequence, based on SEQRES records: (download)
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
gegksidnpwdrmdeidrrfaedkpalatynlkdcelvtqifhkteimpflleratvngl
pvdrhggsvaafghlyfprmhragyvap
Sequence, based on observed residues (ATOM records): (download)
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
aqagfiltrhwrdtpqgtevsfwlatdngplqvtlapqesvafipadqvpraqhilqgeq
gfrltplalkdfhrqpvyglycrahrqlmnyekrlreggvtvyeadvrpperylmerfit
spvwvegdmhngtivnarlkphpdyrpplkwvsidiettrhgelyciglegcgqrivyml
gpengdassldfeleyvasrpqlleklnawfanydpdviigwnvvqfdlrmlqkhaeryr
lplrlgrdnselewrehgfkngvffaqakgrliidgiealksafwnfssfsletvaqell
mdeidrrfaedkpalatynlkdcelvtqifhkteimpflleratvnglpvdrhggsvaaf
ghlyfprmhragyvap
SCOPe Domain Coordinates for d1q8ia1:
Click to download the PDB-style file with coordinates for d1q8ia1.
(The format of our PDB-style files is described here.)
(The format of our PDB-style files is described here.)
Timeline for d1q8ia1:
- d1q8ia1 first appeared in SCOP 1.67
- d1q8ia1 appears in SCOPe 2.05
- d1q8ia1 appears in SCOPe 2.07
- d1q8ia1 appears in the current release, SCOPe 2.08
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