SCOPe 2.07: Structural Classification of Proteins

PDB entry 7nkg

View 7nkg on RCSB PDB site
Description: Methyl-coenzyme M reductase from Methermicoccus shengliensis at 1.6-A resolution
Class: transferase
Keywords: Methyl-coenzyme M reductase, cofactor F430, post-translational modification, archaea, methoxydotrophy, methanogenesis, coenzyme M, coenzyme B, heterodisulfide, radical mechanism, thermophile, thioglycine, TRANSFERASE
Deposited on 2021-02-18, released 2021-05-19
The last revision prior to the SCOPe 2.07 freeze date was dated 2021-05-19, with a file datestamp of 2021-05-14.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Methyl-coenzyme M reductase alpha subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG
Domains in SCOPe 2.07: d7nkga1, d7nkga2
Chain 'B':
Compound: Methyl-coenzyme M reductase beta subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-432)
Domains in SCOPe 2.07: d7nkgb1, d7nkgb2
Chain 'C':
Compound: Methyl-coenzyme M reductase gamma subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-247)
Domains in SCOPe 2.07: d7nkgc_
Chain 'D':
Compound: Methyl-coenzyme M reductase alpha subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-568)
Domains in SCOPe 2.07: d7nkgd1, d7nkgd2
Chain 'E':
Compound: Methyl-coenzyme M reductase beta subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-432)
Domains in SCOPe 2.07: d7nkge1, d7nkge2
Chain 'F':
Compound: Methyl-coenzyme M reductase gamma subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-247)
Domains in SCOPe 2.07: d7nkgf_
Chain 'G':
Compound: Methyl-coenzyme M reductase alpha subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG
Domains in SCOPe 2.07: d7nkgg1, d7nkgg2
Chain 'H':
Compound: Methyl-coenzyme M reductase beta subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-432)
Domains in SCOPe 2.07: d7nkgh1, d7nkgh2
Chain 'I':
Compound: Methyl-coenzyme M reductase gamma subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-247)
Domains in SCOPe 2.07: d7nkgi_
Chain 'J':
Compound: Methyl-coenzyme M reductase alpha subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG
Domains in SCOPe 2.07: d7nkgj1, d7nkgj2
Chain 'K':
Compound: Methyl-coenzyme M reductase beta subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-432)
Domains in SCOPe 2.07: d7nkgk1, d7nkgk2
Chain 'L':
Compound: Methyl-coenzyme M reductase gamma subunit
Species: Methermicoccus shengliensis DSM 18856 [TaxId:1122233]
Database cross-references and differences (RAF-indexed):
- PDB 7NKG (Start-247)
Domains in SCOPe 2.07: d7nkgl_
Heterogens: GOL, K, COM, TP7, F43, SO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>7nkgA (A:)
mtmvdreqlfkkaleikftqewgenkatevstditskkakylrlgtaqsprkrefeqygk
eiaakrglpgydpklhlggiplgqrqitpyvvsstdtlcdgddlhfvnnaamqqmwddir
rtvivgmdlahetlekrlgkevtpetinhylevlnhampgaavvqemmvethpglvddcy
vkvftgddeladeidkrflididkqfgeekaaqikaaigkttwqavhvptivvrtcdgat
tsrwtamqigmsfiaayrmcageaavadlayaakhaalvgmgdmlparrargpnepgglq
fgyladivqadrvtddkvkaslevvaagamlydqiwlgsymsggvgftqyataaytnnil
ddfsyygyeyavdkyggpaqapatletvkdiatetaiyaieqyeyfptlledqfggsqra
avvaaaagiatglatgnsqaglsgwylaqyllkeaegrlgffgydlqdqcgaanvfsyqs
deglplelrgpnypnyamnvghqgeyagiassghigrgdafvvnplvkvafadpllnfdf
tqvrkefakgavrefdrcageralilpak