PDB entry 7djz

View 7djz on RCSB PDB site
Description: Crystal structure of SARS-CoV-2 Spike RBD in complex with MW01 Fab
Class: immune system/viral protein
Keywords: SARS-CoV-2, Spike, RBD, Antibody, ADE, VIRUS, IMMUNE SYSTEM-VIRAL PROTEIN complex
Deposited on 2020-11-22, released 2021-06-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-09, with a file datestamp of 2021-06-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MW01 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7DJZ (0-End)
    Domains in SCOPe 2.08: d7djza_
  • Chain 'B':
    Compound: MW01 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 7DJZ (0-212)
    Domains in SCOPe 2.08: d7djzb1, d7djzb2
  • Chain 'C':
    Compound: Spike protein S1
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7djzc_
  • Heterogens: NAG, CIT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7djzA (A:)
evqlvqsgaevkkpgssvkvsckasggtfssfsiswvrqapgqglewmgriipvlgiany
aqevqgrvtitadkststaymelsslrsedtavyfcttdrfvepatgpffdywgqgtlvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >7djzA (A:)
evqlvqsgaevkkpgssvkvsckasggtfssfsiswvrqapgqglewmgriipvlgiany
aqevqgrvtitadkststaymelsslrsedtavyfcttdrfvepatgpffdywgqgtlvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7djzB (B:)
eivmtqspatlsvspgeratlscrasqsvssnlawyqqkpgqaprlliygastratgipa
rfsgsgsgteftltisslqsedfavyycqqysnwltfgggtkveikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7djzC (C:)
rvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfk
cygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawns
nnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfq
ptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf

    Sequence, based on observed residues (ATOM records): (download) 
    >7djzC (C:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpkks