PDB entry 7cdl

View 7cdl on RCSB PDB site
Description: holo-methanol dehydrogenase (MDH) with Cys131-Cys132 reduced from Methylococcus capsulatus (Bath)
Class: oxidoreductase
Keywords: PQQ, Cys131-Cys132 reduced, OXIDOREDUCTASE
Deposited on 2020-06-20, released 2021-06-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-30, with a file datestamp of 2021-06-25.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdla_
  • Chain 'B':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlb_
  • Chain 'C':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlc_
  • Chain 'D':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdld_
  • Chain 'E':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdle_
  • Chain 'F':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlf_
  • Chain 'G':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlg_
  • Chain 'H':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlh_
  • Chain 'I':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdli_
  • Chain 'J':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlj_
  • Chain 'K':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlk_
  • Chain 'L':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdll_
  • Chain 'M':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlm_
  • Chain 'N':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdln_
  • Chain 'O':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlo_
  • Chain 'P':
    Compound: Methanol dehydrogenase [cytochrome c] subunit 2
    Species: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7cdlp_
  • Heterogens: PQQ, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlA (A:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlB (B:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlC (C:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlD (D:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7cdlE (E:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlE (E:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7cdlF (F:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlF (F:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlG (G:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlH (H:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7cdlI (I:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlI (I:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7cdlJ (J:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlJ (J:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7cdlK (K:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlK (K:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7cdlL (L:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlL (L:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlM (M:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7cdlN (N:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >7cdlO (O:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlO (O:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >7cdlP (P:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >7cdlP (P:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi