PDB entry 7c0c

View 7c0c on RCSB PDB site
Description: Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
Class: lyase
Keywords: L-2-keto-3-deoxyarabonate dehydratase, LYASE
Deposited on 2020-05-01, released 2020-08-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0ca_
  • Chain 'B':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cb_
  • Chain 'C':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cc_
  • Chain 'D':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cd_
  • Chain 'E':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0ce_
  • Chain 'F':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cf_
  • Chain 'G':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cg_
  • Chain 'H':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0ch_
  • Chain 'I':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0ci_
  • Chain 'J':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cj_
  • Chain 'K':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0ck_
  • Chain 'L':
    Compound: L-2-keto-3-deoxyarabonate dehydratase
    Species: AZOSPIRILLUM BRASILENSE [TaxId:192]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d7c0cl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7c0cA (A:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cA (A:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7c0cB (B:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cB (B:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7c0cC (C:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cC (C:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7c0cD (D:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cD (D:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7c0cE (E:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cE (E:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7c0cF (F:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cF (F:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >7c0cG (G:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cG (G:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7c0cH (H:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cH (H:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7c0cI (I:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cI (I:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >7c0cJ (J:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cJ (J:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwah

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7c0cK (K:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cK (K:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >7c0cL (L:)
mrgshhhhhhgstssstprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcil
anfseqfaitdderdvltrtilehvagrvpvivttshystqvcaarslraqqlgaamvma
mppyhgatfrvpeaqifefyarvsdaiaipimvqdapasgtalsapflarmareieqvay
fkietpgaanklrelirlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpil
eawregrhddayaryqawlplinhenrqsgiltakalmreggviaserprhpmpelhpdt
raellaiarrldplvlrwah

    Sequence, based on observed residues (ATOM records): (download) 
    >7c0cL (L:)
tprhrgifpvvpttfadtgeldlasqkravdfmidagsdglcilanfseqfaitdderdv
ltrtilehvagrvpvivttshystqvcaarslraqqlgaamvmamppyhgatfrvpeaqi
fefyarvsdaiaipimvqdapasgtalsapflarmareieqvayfkietpgaanklreli
rlggdaiegpwdgeeaitlladlhagatgamtgggfpdgirpileawregrhddayaryq
awlplinhenrqsgiltakalmreggviaserprhpmpelhpdtraellaiarrldplvl
rwa