PDB entry 6yua

View 6yua on RCSB PDB site
Description: CO-dehydrogenase coupled to the N-terminal domain of the Acetyl-CoA synthase from Clostridium autoethanogenum isolated after tryptic digestion.
Class: oxidoreductase
Keywords: C1-Metabolism, Carbon monoxide, metalloprotein, Acetogenic bacteria, Acetogenesis, CO-dehydrogenase/Acetyl-CoA synthase, X-ray crystal structure, Gas channeling, Waste-gas conversion., OXIDOREDUCTASE
Deposited on 2020-04-26, released 2020-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: XRAY
Resolution: 3.16 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CO dehydrogenase/acetyl-CoA synthase complex, beta subunit
    Species: Clostridium autoethanogenum DSM 10061 [TaxId:1341692]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Carbon-monoxide dehydrogenase (Acceptor),CO-dehydrogenase from Clostridium autoethanogenum DSM 10061
    Species: Clostridium autoethanogenum DSM 10061 [TaxId:1341692]
    Database cross-references and differences (RAF-indexed):
    • Uniprot U5RTE2 (Start-399)
    • PDB 6YUA (400-630)
    Domains in SCOPe 2.08: d6yuab_
  • Chain 'C':
    Compound: Carbon-monoxide dehydrogenase (Acceptor),CO-dehydrogenase from Clostridium autoethanogenum DSM 10061
    Species: Clostridium autoethanogenum DSM 10061 [TaxId:1341692]
    Database cross-references and differences (RAF-indexed):
    • Uniprot U5RTE2 (Start-399)
    • PDB 6YUA (400-630)
    Domains in SCOPe 2.08: d6yuac_
  • Chain 'D':
    Compound: CO dehydrogenase/acetyl-CoA synthase complex, beta subunit
    Species: Clostridium autoethanogenum DSM 10061 [TaxId:1341692]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, XCC, MG, GOL, EDO

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6yuaB (B:)
meekaksidqatlqlldkakqdgvetvwdrkadmkvqcgfgsagvccrncsmgpcrvspv
pgkgvergicgatadvivsrnfarmvaagtaahsdhgrsialslyhtskdgdikvkdenk
lkevaksfnvetegrdiydiahdvakeglsnygkqlgevtlppslpekrkelwrklgvyp
ravdreiaavmhsthigcnadaeamikmsmrcsltdgwmgsfmgtefsdimfgtphsidt
eanlgvleknsvnvvlhghepllsemvveaasdpelvelaksvgadginlcgmcctgnev
smrhgikiagnfmqqelavvtgavdglivdvqcimpalaklsksyhtkfittspkahitd
siymefdeenpldsakkilkeailnfknrdqskvmipelkckailgysveeiinkldkvv
ntqigpmqtvkpladvlvsgvlrgaaavvgcnnpkvvqdsahietikglikndvivvvtg
caaqaaakygllqkeaaekyagpglatvcklvdippvlhmgscvdisrildlvgrvanll
gvdmsdlpvagvapewmsekavaigtyvvtsgidtwlgvappvtggpevvdiltnkmedw
vgakffietdphkaveqivnrmnekrkklgi

    Sequence, based on observed residues (ATOM records): (download) 
    >6yuaB (B:)
ekaksidqatlqlldkakqdgvetvwdrkadmkvqcgfgsagvccrncsmgpcrvspvpg
kgvergicgatadvivsrnfarmvaagtaahsdhgrsialslyhtskdgdikvkdenklk
evaksfnvetegrdiydiahdvakeglsnygkqlgevtlppslpekrkelwrklgvypra
vdreiaavmhsthigcnadaeamikmsmrcsltdgwmgsfmgtefsdimfgtphsidtea
nlgvleknsvnvvlhghepllsemvveaasdpelvelaksvgadginlcgmcctgnevsm
rhgikiagnfmqqelavvtgavdglivdvqcimpalaklsksyhtkfittspkahitdsi
ymefdeenpldsakkilkeailnfknrdqskvmipelkckailgysveeiinkldkvvnt
qigpmqtvkpladvlvsgvlrgaaavvgcnnpkvvqdsahietikglikndvivvvtgca
aqaaakygllqkeaaekyagpglatvcklvdippvlhmgscvdisrildlvgrvanllgv
dmsdlpvagvapewmsekavaigtyvvtsgidtwlgvappvtggpevvdiltnkmedwvg
akffietdphkaveqivnrmnekrkklgi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6yuaC (C:)
meekaksidqatlqlldkakqdgvetvwdrkadmkvqcgfgsagvccrncsmgpcrvspv
pgkgvergicgatadvivsrnfarmvaagtaahsdhgrsialslyhtskdgdikvkdenk
lkevaksfnvetegrdiydiahdvakeglsnygkqlgevtlppslpekrkelwrklgvyp
ravdreiaavmhsthigcnadaeamikmsmrcsltdgwmgsfmgtefsdimfgtphsidt
eanlgvleknsvnvvlhghepllsemvveaasdpelvelaksvgadginlcgmcctgnev
smrhgikiagnfmqqelavvtgavdglivdvqcimpalaklsksyhtkfittspkahitd
siymefdeenpldsakkilkeailnfknrdqskvmipelkckailgysveeiinkldkvv
ntqigpmqtvkpladvlvsgvlrgaaavvgcnnpkvvqdsahietikglikndvivvvtg
caaqaaakygllqkeaaekyagpglatvcklvdippvlhmgscvdisrildlvgrvanll
gvdmsdlpvagvapewmsekavaigtyvvtsgidtwlgvappvtggpevvdiltnkmedw
vgakffietdphkaveqivnrmnekrkklgi

    Sequence, based on observed residues (ATOM records): (download) 
    >6yuaC (C:)
ekaksidqatlqlldkakqdgvetvwdrkadmkvqcgfgsagvccrncsmgpcrvspvpg
kgvergicgatadvivsrnfarmvaagtaahsdhgrsialslyhtskdgdikvkdenklk
evaksfnvetegrdiydiahdvakeglsnygkqlgevtlppslpekrkelwrklgvypra
vdreiaavmhsthigcnadaeamikmsmrcsltdgwmgsfmgtefsdimfgtphsidtea
nlgvleknsvnvvlhghepllsemvveaasdpelvelaksvgadginlcgmcctgnevsm
rhgikiagnfmqqelavvtgavdglivdvqcimpalaklsksyhtkfittspkahitdsi
ymefdeenpldsakkilkeailnfknrdqskvmipelkckailgysveeiinkldkvvnt
qigpmqtvkpladvlvsgvlrgaaavvgcnnpkvvqdsahietikglikndvivvvtgca
aqaaakygllqkeaaekyagpglatvcklvdippvlhmgscvdisrildlvgrvanllgv
dmsdlpvagvapewmsekavaigtyvvtsgidtwlgvappvtggpevvdiltnkmedwvg
akffietdphkaveqivnrmnekrkklgi

  • Chain 'D':
    No sequence available.