PDB entry 6yjz

View 6yjz on RCSB PDB site
Description: Crystal structure of mouse pyridoxal kinase in apo form
Class: transferase
Keywords: PDXK, PLP, PL, Vitamin B6, Enzyme, TRANSFERASE
Deposited on 2020-04-05, released 2021-04-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyridoxal kinase
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YJZ (Start-313)
    Domains in SCOPe 2.08: d6yjza_
  • Chain 'B':
    Compound: Pyridoxal kinase
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YJZ (Start-313)
    Domains in SCOPe 2.08: d6yjzb_
  • Chain 'C':
    Compound: Pyridoxal kinase
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YJZ (Start-313)
    Domains in SCOPe 2.08: d6yjzc_
  • Chain 'D':
    Compound: Pyridoxal kinase
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YJZ (Start-313)
    Domains in SCOPe 2.08: d6yjzd_
  • Heterogens: EDO, GOL, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6yjzA (A:)
gpmegecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlk
sqelhelyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgd
kwngegsmyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcm
gpdtvvitssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfa
amllawthkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskr
diedpeivvqatvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6yjzA (A:)
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdksmyv
pqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtvvitss
dlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfaamllawthkh
pdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedpeivvq
atvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6yjzB (B:)
gpmegecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlk
sqelhelyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgd
kwngegsmyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcm
gpdtvvitssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfa
amllawthkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskr
diedpeivvqatvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6yjzB (B:)
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdkwneg
smyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtvv
itssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfaamllaw
thkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedpe
ivvqatvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6yjzC (C:)
gpmegecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlk
sqelhelyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgd
kwngegsmyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcm
gpdtvvitssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfa
amllawthkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskr
diedpeivvqatvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6yjzC (C:)
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdksmyv
pqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtvvitss
dlpssqgsdylialgsqrmrdgstvtqrirmemrkveavfvgtgdlfaamllawthkhpd
nlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedpeivvqat
vl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6yjzD (D:)
gpmegecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlk
sqelhelyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgd
kwngegsmyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcm
gpdtvvitssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfa
amllawthkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskr
diedpeivvqatvl

    Sequence, based on observed residues (ATOM records): (download) 
    >6yjzD (D:)
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdkyvpq
dllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtvvitssdl
pssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfaamllawthkhpd
nlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedpeivvqat
vl