PDB entry 6rdj
View 6rdj on RCSB PDB site
Description: Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, focussed refinement of F1 head and rotor
Class: proton transport
Keywords: mitochondrial ATP synthase dimer flexible coupling cryoEM, PROTON TRANSPORT
Deposited on
2019-04-12, released
2019-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-09-30, with a file datestamp of
2020-09-25.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: Mitochondrial ATP synthase subunit c
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: Mitochondrial ATP synthase subunit OSCP
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: epsilon: Polytomella F-ATP synthase epsilon subunit
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: Mitochondrial ATP synthase subunit delta
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: ATP synthase gamma chain, mitochondrial
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6rdjs_ - Chain 'T':
Compound: ATP synthase subunit alpha
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6rdjt1, d6rdjt2, d6rdjt3 - Chain 'U':
Compound: ATP synthase subunit alpha
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: ATP synthase subunit alpha
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: ATP synthase subunit beta
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Uniprot A0ZW41 (Start-573)
- conflict (349)
- conflict (386)
- Chain 'Y':
Compound: ATP synthase subunit beta
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Uniprot A0ZW41
- conflict (349)
- conflict (386)
- Chain 'Z':
Compound: ATP synthase subunit beta
Species: Polytomella sp. Pringsheim 198.80 [TaxId:37502]
Database cross-references and differences (RAF-indexed):
- Uniprot A0ZW41 (Start-573)
- conflict (349)
- conflict (386)
- Heterogens: ATP, MG, ADP
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'S':
Sequence, based on SEQRES records: (download)
>6rdjS (S:)
malrkavlslglsqgvaaeavlgsgmfnavqhesvryasnqavkqriraiknigkitkam
kmvaaskmknaqiaveqsrglvdpfvrlfgdfpavnsnksvvvavtsdkglcgglnsnit
kytratlattesegkdvvvvsigdkgrsqltriesqryqlaiadtykvrvtfgqaslive
elikhnpqsyqilfnkfrsaisfkptvatilspdllekqledvtgnsldaydieashers
dvlrdltefhlgvtlynamlenncsehasrmsamenstksagemlgkltldynrkrqati
ttelieiiagasalmde
Sequence, based on observed residues (ATOM records): (download)
>6rdjS (S:)
snqavkqriraiknigkitkamkmvaaskmknaqiaveqsrglvdpfvrlfgdfpavnsn
ksvvvavtsdkglcgglnsnitkytratlattesegkdvvvvsigdkgrsqltriesqry
qlaiadtykvrvtfgqasliveelikhnpqsyqilfnkfrsaisfkptvatilspdllek
qledvtgnsldaydieashersdvlrdltefhlgvtlynamlenncsehasrmsamenst
ksagemlgkltldynrkrqatittelieiiagasalm
- Chain 'T':
Sequence, based on SEQRES records: (download)
>6rdjT (T:)
mrspaafvarsglfkaslgqsnwaqkaeqmmasvtrtfaadakaldelrkpkfsskyliq
hvsqklipavkeweksyqppvihlgrvlsvgdgiarvyglksvqagelvcfdsgvkgmal
nlqadhvgvvvfgndsvihqgdlvyrtgqivnvpigpgtlgrvtdglgqpidgkgpltnv
rsslvevkapgiiarqsvreplftgvkavdalvpigrgqreliigdrqtgktavaidaii
hqkncneqvpkaqrvycvyvavgqkrstvaqlvklftqtgamrytimvsatasdaaplqf
lapysgcamaeyfrdtgkhgliiyddlskqsvayrqmslllrrppgreafpgdvfylhsr
lleraaklskelgggsltafpvietqagdvsayiatnvisitdgqifletelfykgirpa
lnvglsvsrvgsaaqfpgmkqvagtlklelaqyrevaafaqfgsdldaatqyvlergarl
temlkqkqfapipierqtvavyaatkgfldkvrvqdivaaeeavisqvnpavfkilkang
kitpaldahlkaelrkvklpga
Sequence, based on observed residues (ATOM records): (download)
>6rdjT (T:)
grvlsvgdgiarvyglksvqagelvcfdsgvkgmalnlqadhvgvvvfgndsvihqgdlv
yrtgqivnvpigpgtlgrvtdglgqpidgkgpltnvrsslvevkapgiiarqsvreplft
gvkavdalvpigrgqreliigdrqtgktavaidaiihqkncneqvpkaqrvycvyvavgq
krstvaqlvklftqtgamrytimvsatasdaaplqflapysgcamaeyfrdtgkhgliiy
ddlskqsvayrqmslllrrppgreafpgdvfylhsrlleraaklskelgggsltafpvie
tqagdvsayiatnvisitdgqifletelfykgirpalnvglsvsrvgsaaqfpgmkqvag
tlklelaqyrevaafaqfgsdldaatqyvlergarltemlkqkqfapipierqtvavyaa
tkgfldkvrvqdivaaeeavisqvnpavfkilkangkitpaldahlkaelrkvklpga
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.