PDB entry 6qpu

View 6qpu on RCSB PDB site
Description: Crystal structure of as isolated synthetic core domain of nitrite reductase from Ralstonia pickettii (residues 1-331)
Class: metal binding protein
Keywords: synthetic core domain, nitrite reductase, inter-copper electron transfer, METAL BINDING PROTEIN
Deposited on 2019-02-15, released 2019-11-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpua1, d6qpua2
  • Chain 'B':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpub1, d6qpub2
  • Chain 'C':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpuc1, d6qpuc2
  • Chain 'D':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpud1, d6qpud2
  • Chain 'E':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpue1, d6qpue2
  • Chain 'F':
    Compound: Copper-containing nitrite reductase
    Species: Ralstonia sp. 5_2_56FAA [TaxId:658080]
    Gene: HMPREF0989_00586
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6qpuf1, d6qpuf2
  • Heterogens: CU, CL, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6qpuA (A:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuA (A:)
pgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtfgg
tvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftfka
lnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrekgl
qpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhvigai
fdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamailki
dgaenklvysgkeldsvylg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6qpuB (B:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuB (B:)
pgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtfgg
tvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftfka
lnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrekgl
qpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhvigai
fdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamailki
dgaenklvysgkeldsvyl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6qpuC (C:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuC (C:)
klpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtf
ggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftf
kalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrek
glqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhvig
aifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamail
kidgaenklvysgkeldsvylg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6qpuD (D:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuD (D:)
pgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtfgg
tvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftfka
lnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrekgl
qpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhvigai
fdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamailki
dgaenklvysgkeldsvyl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6qpuE (E:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuE (E:)
lpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtfg
gtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftfk
alnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrekg
lqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhviga
ifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamailk
idgaenklvysgkeldsvyl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6qpuF (F:)
asaklpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytf
wtfggtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesq
ftfkalnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagky
rekglqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfh
vigaifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgam
ailkidgaenklvysgkeldsvylgdraapn

    Sequence, based on observed residues (ATOM records): (download) 
    >6qpuF (F:)
lpgdfgpprgepihavltspplvpppvnrtypakvivelevvekemqisegvsytfwtfg
gtvpgsfirvrqgdtvefhlknhpsskmphnidlhgvtgpgggaassftapghesqftfk
alnegiyvyhcatapvgmhiangmyglilveppeglpkvdheyyvmqgdfytagkyrekg
lqpfdmekaiderpsyvlfngaegaltgdkalhakvgetvrifvgnggpnlvssfhviga
ifdqvryeggtnvqknvqttlipaggaavvkftarvpgsyvlvdhsifrafnkgamailk
idgaenklvysgkeldsvylg