PDB entry 6ojp
View 6ojp on RCSB PDB site
Description: Structure of glycolipid alpha-GSA[8,6P] in complex with mouse CD1d
Class: immune system
Keywords: glycolipid-antigen presentation, MHC-fold, IG-fold, IMMUNE SYSTEM
Deposited on
2019-04-11, released
2019-08-21
The last revision prior to the SCOPe 2.07 freeze date was dated
2019-08-21, with a file datestamp of
2019-08-16.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1, mCG_3074
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0R4J090 (Start-278)
- engineered mutation (72)
- expression tag (279-282)
Domains in SCOPe 2.07: d6ojpa1, d6ojpa2, d6ojpa3 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6ojpb_ - Heterogens: NAG, BMA, MAN, FUC, 7LP, PLM, GOL, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6ojpA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvhrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>6ojpA (A:)
knytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwek
lqhmfqvhrvsftrdiqelvdypieiqlsagcemypgnasesflhvafqgkyvvrfwgts
wqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpvaw
lssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatld
veageeaglacrvkhsslggqdiilywhhhh
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6ojpB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm