PDB entry 6c6j

View 6c6j on RCSB PDB site
Description: Structure of glycolipid aGSA[8,P5p] in complex with mouse CD1d
Class: immune system
Keywords: Glycolipid-antigen presentation, MHC-fold, Ig-fold, IMMUNE SYSTEM
Deposited on 2018-01-18, released 2019-01-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-30, with a file datestamp of 2019-01-25.
Experiment type: XRAY
Resolution: 1.79 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d1, mCG_3074
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6c6ja1, d6c6ja2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6c6jb_
  • Heterogens: J76, NAG, BMA, MAN, FUC, PLM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6c6jA (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6c6jA (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgsesflhvafqgkyvvrf
wgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqek
pvawlssvphrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatldv
eageeaglacrvkhsslggqdiilyw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6c6jB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm