PDB entry 5zjm

View 5zjm on RCSB PDB site
Description: Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum
Class: lyase
Keywords: N-acetylneuraminate lyase; Sialic acid catabolism; TIM-barrel, LYASE
Deposited on 2018-03-21, released 2019-01-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-01-23, with a file datestamp of 2019-01-18.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetylneuraminate lyase
    Species: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [TaxId:190304]
    Gene: nanA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RDN6 (2-290)
      • expression tag (1)
    Domains in SCOPe 2.07: d5zjma1, d5zjma2
  • Chain 'B':
    Compound: n-acetylneuraminate lyase
    Species: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [TaxId:190304]
    Gene: nanA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RDN6 (2-290)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5zjmb1, d5zjmb2
  • Chain 'C':
    Compound: n-acetylneuraminate lyase
    Species: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [TaxId:190304]
    Gene: nanA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RDN6 (2-290)
      • expression tag (1)
    Domains in SCOPe 2.07: d5zjmc1, d5zjmc2
  • Chain 'D':
    Compound: n-acetylneuraminate lyase
    Species: Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [TaxId:190304]
    Gene: nanA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8RDN6 (2-290)
      • expression tag (0-1)
    Domains in SCOPe 2.07: d5zjmd1, d5zjmd2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5zjmA (A:)
gfmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkr
vfeiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdy
yetivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafp
dklifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndl
iegilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk

    Sequence, based on observed residues (ATOM records): (download) 
    >5zjmA (A:)
fmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkrv
feiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdyy
etivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafpd
klifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndli
egilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5zjmB (B:)
gfmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkr
vfeiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdy
yetivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafp
dklifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndl
iegilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5zjmC (C:)
gfmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkr
vfeiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdy
yetivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafp
dklifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndl
iegilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk

    Sequence, based on observed residues (ATOM records): (download) 
    >5zjmC (C:)
fmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkrv
feiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdyy
etivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafpd
klifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndli
egilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5zjmD (D:)
gfmkgiysalmvpynedgsinekglreiirynidkmkvdglyvggstgenfmisteekkr
vfeiaideakdsvnliaqvgsinlneavelgkyvtklgykclsavtpfyykfdfseikdy
yetivretgnymiiysipfltgvnmslsqfgelfenekiigvkftagdfyllervrkafp
dklifagfdemllpatvlgvdgaigstyningirakqifelaknskidealkiqhttndl
iegilsnglyqtikeilklegvdagycrkpmkkisqkqiefakelhkkflk