PDB entry 5xfh

View 5xfh on RCSB PDB site
Description: Crystal structure of Orysata lectin in complex with biantennary N-glycan
Class: sugar binding protein
Keywords: Lectin, Jacalin-related lectin, N-glycan, Glycobiology, SUGAR BINDING PROTEIN
Deposited on 2017-04-10, released 2017-10-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-12-06, with a file datestamp of 2017-12-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Salt stress-induced protein
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Gene: SALT, ML, Os01g0348900, LOC_Os01g24710, B1051E10.18, P0440D10.39
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0JMY8 (Start-144)
      • see sequence details (61)
    Domains in SCOPe 2.07: d5xfha_
  • Chain 'B':
    Compound: Salt stress-induced protein
    Species: Oryza sativa Japonica Group [TaxId:39947]
    Gene: SALT, ML, Os01g0348900, LOC_Os01g24710, B1051E10.18, P0440D10.39
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0JMY8 (Start-144)
      • see sequence details (61)
    Domains in SCOPe 2.07: d5xfhb_
  • Heterogens: NAG, MAN, BMA, GAL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5xfhA (A:)
mtlvkigpwggnggsaqdisvppkkllgvtiyssdairsiafnyigvdgqeyaigpwggg
eststeiklgsseqikeisgthgpvydladivtylkivtsanntyeagvpngkefsiplq
dsghvvgffgrsgtlidaigiyvhp

    Sequence, based on observed residues (ATOM records): (download) 
    >5xfhA (A:)
tlvkigpwggnggsaqdisvppkkllgvtiyssdairsiafnyigvdgqeyaigpwggst
steiklsseqikeisgthgpvydladivtylkivtsanntyeagvpngkefsiplqdsgh
vvgffgrsgtlidaigiyvhp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5xfhB (B:)
mtlvkigpwggnggsaqdisvppkkllgvtiyssdairsiafnyigvdgqeyaigpwggg
eststeiklgsseqikeisgthgpvydladivtylkivtsanntyeagvpngkefsiplq
dsghvvgffgrsgtlidaigiyvhp

    Sequence, based on observed residues (ATOM records): (download) 
    >5xfhB (B:)
tlvkigpwggnggsaqdisvppkkllgvtiyssdairsiafnyigvdgqeyaigpwggge
ststeiklgsseqikeisgthgpvydladivtylkivtsanntyeagvpngkefsiplqd
sghvvgffgrsgtlidaigiyvhp