PDB entry 5wql
View 5wql on RCSB PDB site
Description: Structure of a PDZ-protease bound to a substrate-binding adaptor
Class: protein binding/signaling protein/hydrolase/peptide
Keywords: Prc, NlpI, protein degradation, peptidoglycan, PROTEIN BINDING-SIGNALING PROTEIN-HYDROLASE-PEPTIDE complex
Deposited on
2016-11-27, released
2017-11-22
The last revision prior to the SCOPe 2.06 freeze date was dated
2017-11-22, with a file datestamp of
2017-11-17.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Lipoprotein nlpI
Species: Escherichia coli K-12 [TaxId:83333]
Gene: nlpi
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5wqla1, d5wqla2 - Chain 'B':
Compound: Lipoprotein nlpI
Species: Escherichia coli K-12 [TaxId:83333]
Gene: nlpi
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d5wqlb_ - Chain 'C':
Compound: Tail-specific protease
Species: Escherichia coli K-12 [TaxId:83333]
Gene: prc
Database cross-references and differences (RAF-indexed):
- Uniprot P23865
- engineered mutation (476)
- Chain 'D':
Compound: Tail-specific protease
Species: Escherichia coli K-12 [TaxId:83333]
Gene: prc
Database cross-references and differences (RAF-indexed):
- Uniprot P23865
- engineered mutation (476)
- Chain 'E':
Compound: ala-ala-ala-ala
Species: Escherichia coli K-12 [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: ala-ala-ala-ala-ala-ala
Species: Escherichia coli K-12 [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: leu-ser-arg-ser
Species: Escherichia coli K-12 [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: ala-ala-ala-ala-ala-ala
Species: Escherichia coli K-12 [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5wqlA (A:)
ghmsntswrksevlavplqptlqqevilarmeqilasraltdderaqllyergvlydslg
lralarndfsqalairpdmpevfnylgiyltqagnfdaayeafdsvleldptynyahlnr
gialyyggrdklaqddllafyqddpndpfrslwlylaeqkldekqakevlkqhfeksdke
qwgwnivefylgniseqtlmerlkadatdntslaehlsetnfylgkyylslgdldsatal
fklavannvhnfvehryallelsllgqdqddlaesdqq
Sequence, based on observed residues (ATOM records): (download)
>5wqlA (A:)
msntswrksevlavplqptlqqevilarmeqilasraltdderaqllyergvlydslglr
alarndfsqalairpdmpevfnylgiyltqagnfdaayeafdsvleldptynyahlnrgi
alyyggrdklaqddllafyqddpndpfrslwlylaeqkldekqakevlkqhfeksdkeqw
gwnivefylgniseqtlmerlkadatdntslaehlsetnfylgkyylslgdldsatalfk
lavannvhnfvehryallelsllgqdqddl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5wqlB (B:)
ghmsntswrksevlavplqptlqqevilarmeqilasraltdderaqllyergvlydslg
lralarndfsqalairpdmpevfnylgiyltqagnfdaayeafdsvleldptynyahlnr
gialyyggrdklaqddllafyqddpndpfrslwlylaeqkldekqakevlkqhfeksdke
qwgwnivefylgniseqtlmerlkadatdntslaehlsetnfylgkyylslgdldsatal
fklavannvhnfvehryallelsllgqdqddlaesdqq
Sequence, based on observed residues (ATOM records): (download)
>5wqlB (B:)
ntswrksevlavplqptlqqevilarmeqilasraltdderaqllyergvlydslglral
arndfsqalairpdmpevfnylgiyltqagnfdaayeafdsvleldptynyahlnrgial
yyggrdklaqddllafyqddpndpfrslwlylaeqkldekqakevlkqhfeksdkeqwgw
nivefylgniseqtlmerlkadatdntslaehlsetnfylgkyylslgdldsatalfkla
vannvhnfvehryallelsllgqdqddl
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.