PDB entry 5trp

View 5trp on RCSB PDB site
Description: Crystal Structure of the Unliganded DH270 Cooperating Lineage Member DH272
Class: immune system
Keywords: fab fragment, hiv-1, antibody, immune system
Deposited on 2016-10-27, released 2017-03-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: DH272 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5TRP (0-End)
    Domains in SCOPe 2.08: d5trph_
  • Chain 'L':
    Compound: DH272 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 5TRP (0-End)
    Domains in SCOPe 2.08: d5trpl1, d5trpl2
  • Heterogens: SO4, NAG, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5trpH (H:)
qvqlvqsgaevkkpgasvkvschasgfrftdhyinwlrqapgqefewigwinpgnsvthy
aqkfqarvtmtrfgstiymelnrlrsddtavyycarepydfhsglegsldywgqgtlvtv
sgastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5trpH (H:)
qvqlvqsgaevkkpgasvkvschasgfrftdhyinwlrqapgqefewigwinpgnsvthy
aqkfqarvtmtrfgstiymelnrlrsddtavyycarepydfhsglegsldywgqgtlvtv
sgastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvep

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5trpL (L:)
divmtqsplslpvtlgqpasiscrssqslvhnygntylnwfqqrpgqsprrliykvsgrd
sgvpdrfsgggsgtdftlkissveaedvgvyycmqgthwprtfgqgtkleinrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5trpL (L:)
divmtqsplslpvtlgqpasiscrssqslvhnygntylnwfqqrpgqsprrliykvsgrd
sgvpdrfsgggsgtdftlkissveaedvgvyycmqgthwprtfgqgtkleinrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrg