PDB entry 5lfe

View 5lfe on RCSB PDB site
Description: Protruding domain of GII.4 human norovirus isolate 8-14 in complex with HBGA type B (triglycan)
Class: viral protein
Keywords: Viral capsid protein, Protruding domain, viral protein, Norovirus, HBGA, Histo-blood group antigen
Deposited on 2016-07-01, released 2017-07-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Database cross-references and differences (RAF-indexed):
    • Uniprot M4QNL3 (3-308)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d5lfea1, d5lfea2
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5lfeb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5lfeA (A:)
pgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspv
nictfrgdvthitgsrnytmnlasqnwnnydpteeipaplgapdfvgkiqgmltqttrad
gstrghkatvytgsadfapklgrvqfetdtdhdfeanqntkftpvgviqdgstthrnepq
qwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5lfeB (B:)
pgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspv
nictfrgdvthitgsrnytmnlasqnwnnydpteeipaplgapdfvgkiqgmltqttrad
gstrghkatvytgsadfapklgrvqfetdtdhdfeanqntkftpvgviqdgstthrnepq
qwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >5lfeB (B:)
kpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspvnic
tfrgdvthitgsrnytmnlasqnwnnydpteeipaplgapdfvgkiqgmltqttradgst
rghkatvytgsadfapklgrvqfetdtdhdfeanqntkftpvgviqdgstthrnepqqwv
lpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyfyqe
aapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqf
ytlapm