PDB entry 5kdo

View 5kdo on RCSB PDB site
Description: Heterotrimeric complex of the 4 alanine insertion variant of the Gi alpha1 subunit and the Gbeta1-Ggamma1
Class: signaling protein
Keywords: Heterotrimeric G protein G protein Coupled Receptors G protein activation G protein structure GDP release, SIGNALING PROTEIN
Deposited on 2016-06-08, released 2016-08-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-08-03, with a file datestamp of 2016-07-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Guanine nucleotide-binding protein G(i) subunit alpha-1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: GNAI1, GNAI-1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10824
      • insertion (333-336)
  • Chain 'B':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
    Species: Bos taurus [TaxId:9913]
    Gene: GNB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5kdob_
  • Chain 'G':
    Compound: Guanine nucleotide-binding protein G(T) subunit gamma-T1
    Species: Bos taurus [TaxId:9913]
    Gene: GNGT1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5kdog_
  • Heterogens: GDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5kdoB (B:)
mseldqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiya
mhwgtdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldni
csiynlktregnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttf
tghtgdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpngna
fatgsddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdal
kadragvlaghdnrvsclgvtddgmavatgswdsflkiwn

    Sequence, based on observed residues (ATOM records): (download) 
    >5kdoB (B:)
seldqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiyam
hwgtdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldnic
siynlktvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttftghtg
dvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpngnafatgs
ddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdalkadra
gvlaghdnrvsclgvtddgmavatgswdsflkiwn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5kdoG (G:)
mpviniedltekdklkmevdqlkkevtlermlvskcceefrdyveersgedplvkgiped
knpfkelkggcvis

    Sequence, based on observed residues (ATOM records): (download) 
    >5kdoG (G:)
tekdklkmevdqlkkevtlermlvskcceefrdyveersgedplvkgipedknpfk