PDB entry 5jpt

View 5jpt on RCSB PDB site
Description: crystal structure of the prp43p deah-box RNA helicase in complex with cdp
Class: hydrolase
Keywords: RNA helicase, Prp43p, DEAH/RHA, hydrolase
Deposited on 2016-05-04, released 2017-02-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-02-22, with a file datestamp of 2017-02-17.
Experiment type: XRAY
Resolution: 2.94 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRP43, YGL120C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5jpta1, d5jpta2, d5jpta3, d5jpta4, d5jpta5
  • Chain 'B':
    Compound: Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRP43, YGL120C
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5jptb1, d5jptb2, d5jptb3, d5jptb4, d5jptb5
  • Heterogens: CDP, MG, GOL, ACT, NI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5jptA (A:)
mgskrrfssehpdpvetsipeqaaeiaeelskqhplpseeplvhhdagefkglqrhhtsa
eeaqkledgkinpftgreftpkyvdilkirrelpvhaqrdeflklyqnnqimvfvgetgs
gkttqipqfvlfdemphlentqvactqprrvaamsvaqrvaeemdvklgeevgysirfen
ktsnktilkymtdgmllreamedhdlsrysciildeahertlatdilmgllkqvvkrrpd
lkiiimsatldaekfqryfndapllavpgrtypvelyytpefqrdyldsairtvlqihat
eeagdillfltgedeiedavrkislegdqlvreegcgplsvyplygslpphqqqrifepa
peshngrpgrkvvistniaetsltidgivyvvdpgfskqkvynprirvesllvspiskas
aqqragragrtrpgkcfrlyteeafqkelieqsypeilrsnlsstvlelkklgiddlvhf
dfmdppapetmmraleelnylaclddegnltplgrlasqfpldpmlavmligsfefqcsq
eiltivamlsvpnvfirptkdkkraddaknifahpdgdhitllnvyhafksdeayeygih
kwcrdhylnyrslsaadnirsqlerlmnrynlelnttdyespkyfdnirkalasgffmqv
akkrsgakgyitvkdnqdvlihpstvlghdaewviynefvltsknyirtvtsvrpewlie
iapayydlsnfqkgdvklslerikekvdrlnelkqgknkkkskhskk

    Sequence, based on observed residues (ATOM records): (download) 
    >5jptA (A:)
skrrfssehpdpvetsipeqaaeiaeelskqhplpseeplvhhdagefkglqrhhtsaee
aqkledgkinpftgreftpkyvdilkirrelpvhaqrdeflklyqnnqimvfvgetgsgk
ttqipqfvlfdemphlentqvactqprrvaamsvaqrvaeemdvklgeevgysirfenkt
snktilkymtdgmllreamedhdlsrysciildeahertlatdilmgllkqvvkrrpdlk
iiimsatldaekfqryfndapllavpgrtypvelyytpefqrdyldsairtvlqihatee
agdillfltgedeiedavrkislegdqlvreegcgplsvyplygslpphqqqrifepape
shngrpgrkvvistniaetsltidgivyvvdpgfskqkvynprirvesllvspiskasaq
qragragrtrpgkcfrlyteeafqkelieqsypeilrsnlsstvlelkklgiddlvhfdf
mdppapetmmraleelnylaclddegnltplgrlasqfpldpmlavmligsfefqcsqei
ltivamlsvpnvfirptkdkkraddaknifahpdgdhitllnvyhafksdeayeygihkw
crdhylnyrslsaadnirsqlerlmnrynlelnttdyespkyfdnirkalasgffmqvak
krsggyitvkdnqdvlihpstvlghdaewviynefvltsknyirtvtsvrpewlieiapa
yydlsnfqkgdvklslerikekvdr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5jptB (B:)
mgskrrfssehpdpvetsipeqaaeiaeelskqhplpseeplvhhdagefkglqrhhtsa
eeaqkledgkinpftgreftpkyvdilkirrelpvhaqrdeflklyqnnqimvfvgetgs
gkttqipqfvlfdemphlentqvactqprrvaamsvaqrvaeemdvklgeevgysirfen
ktsnktilkymtdgmllreamedhdlsrysciildeahertlatdilmgllkqvvkrrpd
lkiiimsatldaekfqryfndapllavpgrtypvelyytpefqrdyldsairtvlqihat
eeagdillfltgedeiedavrkislegdqlvreegcgplsvyplygslpphqqqrifepa
peshngrpgrkvvistniaetsltidgivyvvdpgfskqkvynprirvesllvspiskas
aqqragragrtrpgkcfrlyteeafqkelieqsypeilrsnlsstvlelkklgiddlvhf
dfmdppapetmmraleelnylaclddegnltplgrlasqfpldpmlavmligsfefqcsq
eiltivamlsvpnvfirptkdkkraddaknifahpdgdhitllnvyhafksdeayeygih
kwcrdhylnyrslsaadnirsqlerlmnrynlelnttdyespkyfdnirkalasgffmqv
akkrsgakgyitvkdnqdvlihpstvlghdaewviynefvltsknyirtvtsvrpewlie
iapayydlsnfqkgdvklslerikekvdrlnelkqgknkkkskhskk

    Sequence, based on observed residues (ATOM records): (download) 
    >5jptB (B:)
skrrfssehpdpvetsipeqaaeiaeelskqhplpseeplvhhdagefkglqrhhtsaee
aqkledgkinpftgreftpkyvdilkirrelpvhaqrdeflklyqnnqimvfvgetgsgk
ttqipqfvlfdemphlentqvactqprrvaamsvaqrvaeemdvklgeevgysirfenkt
snktilkymtdgmllreamedhdlsrysciildeahertlatdilmgllkqvvkrrpdlk
iiimsatldaekfqryfndapllavpgrtypvelyytpefqrdyldsairtvlqihatee
agdillfltgedeiedavrkislegdqlvreegcgplsvyplygslpphqqqrifepape
shngrpgrkvvistniaetsltidgivyvvdpgfskqkvynprirvesllvspiskasaq
qragragrtrpgkcfrlyteeafqkelieqsypeilrsnlsstvlelkklgiddlvhfdf
mdppapetmmraleelnylaclddegnltplgrlasqfpldpmlavmligsfefqcsqei
ltivamlsvpnvfirptkdkkraddaknifahpdgdhitllnvyhafksdeayeygihkw
crdhylnyrslsaadnirsqlerlmnrynlelnttdyespkyfdnirkalasgffmqvak
krgyitvkdnqdvlihpstvlghdaewviynefvltsknyirtvtsvrpewlieiapayy
dlsnfqkgdvklslerikekv