PDB entry 5j3o

View 5j3o on RCSB PDB site
Description: Protruding domain of GII.4 human norovirus NSW0514 in complex with 3-fucosyllactose (3FL)
Class: viral protein
Keywords: Viral capsid protein, Protruding domain, viral protein, Norovirus, Human milk oligosaccharides
Deposited on 2016-03-31, released 2017-04-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.47 Å
R-factor: N/A
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K4LM89 (3-308)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d5j3oa1, d5j3oa2
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Database cross-references and differences (RAF-indexed):
    • Uniprot K4LM89 (3-308)
      • expression tag (0-2)
    Domains in SCOPe 2.08: d5j3ob1, d5j3ob2
  • Heterogens: EDO, FUC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5j3oA (A:)
pgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspv
nictfrgdvthitgsrnytmnlasqnwndydpteeipaplgtpdfvgkiqgvltqttrtd
gstrghkatvytgsadfapklgrvqfetdtdrdfeanqntkftpvgviqdggtthrnepq
qwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5j3oB (B:)
pgskpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspv
nictfrgdvthitgsrnytmnlasqnwndydpteeipaplgtpdfvgkiqgvltqttrtd
gstrghkatvytgsadfapklgrvqfetdtdrdfeanqntkftpvgviqdggtthrnepq
qwvlpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyf
yqeaapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswv
nqfytlapm