PDB entry 5dyo

View 5dyo on RCSB PDB site
Description: Fab43.1 complex with flourescein
Class: immune system
Keywords: antibody Fab Flourescein, IMMUNE SYSTEM
Deposited on 2015-09-25, released 2016-01-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-21, with a file datestamp of 2018-03-16.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fab 43.1 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DYO (0-End)
    Domains in SCOPe 2.08: d5dyoa_
  • Chain 'B':
    Compound: Fab 43.1 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DYO (0-217)
    Domains in SCOPe 2.08: d5dyob1, d5dyob2
  • Chain 'H':
    Compound: Fab 43.1 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DYO (0-211)
    Domains in SCOPe 2.08: d5dyoh_
  • Chain 'L':
    Compound: Fab 43.1 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DYO (0-End)
    Domains in SCOPe 2.08: d5dyol1, d5dyol2
  • Heterogens: FLU, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dyoA (A:)
vqlqqsgpelvkpgasvkmsckasgytfstsvihwvkqkpgqglewigyifpynygtqyn
eefrgkatltsdkssntaymelssltsedsavyycasrsgpwgqgttltvssakttapsv
yplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssv
tvtsstwpsqsitcnvahpasstkvdkkiepr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dyoA (A:)
vqlqqsgpelvkpgasvkmsckasgytfstsvihwvkqkpgqglewigyifpynygtqyn
eefrgkatltsdkssntaymelssltsedsavyycasrsgpwgqgttltvssakttapsv
yplapvssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssvtvtsst
wpsqsitcnvahpasstkvdkkiep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5dyoB (B:)
dvvmtqtpltlsitigqpvsisckssqslfasdgrtylnwllqrpgqsperliylvsnld
sgvldrftgsgsgtdftlkisrveaedlgvyycwqgthfpqtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5dyoH (H:)
vqlqqsgpelvkpgasvkmsckasgytfstsvihwvkqkpgqglewigyifpynygtqyn
eefrgkatltsdkssntaymelssltsedsavyycasrsgpwgqgttltvssakttapsv
yplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssv
tvtsstwpsqsitcnvahpasstkvdkkiepr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5dyoL (L:)
dvvmtqtpltlsitigqpvsisckssqslfasdgrtylnwllqrpgqsperliylvsnld
sgvldrftgsgsgtdftlkisrveaedlgvyycwqgthfpqtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrne

    Sequence, based on observed residues (ATOM records): (download) 
    >5dyoL (L:)
dvvmtqtpltlsitigqpvsisckssqslfasdgrtylnwllqrpgqsperliylvsnld
sgvldrftgsgsgtdftlkisrveaedlgvyycwqgthfpqtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnr