PDB entry 5dbt

View 5dbt on RCSB PDB site
Description: Crystal structure of C-terminal truncated 2-deoxyribose-5-phosphate aldolase (1-201) from Streptococcus suis
Class: lyase
Keywords: 2-deoxyribose-5-phosphate aldolase, Streptococcus, LYASE
Deposited on 2015-08-22, released 2016-04-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-04-13, with a file datestamp of 2016-04-08.
Experiment type: XRAY
Resolution: 2.81 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbta_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtb_
  • Chain 'C':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtc_
  • Chain 'D':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtd_
  • Chain 'E':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbte_
  • Chain 'F':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtf_
  • Chain 'G':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtg_
  • Chain 'H':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbth_
  • Chain 'I':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbti_
  • Chain 'J':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtj_
  • Chain 'K':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtk_
  • Chain 'L':
    Compound: deoxyribose-phosphate aldolase
    Species: Streptococcus suis GZ1 [TaxId:423211]
    Gene: deoC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5dbtl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dbtA (A:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtA (A:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5dbtB (B:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtB (B:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5dbtC (C:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtC (C:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5dbtD (D:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtD (D:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5dbtE (E:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtE (E:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5dbtF (F:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtF (F:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5dbtG (G:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtG (G:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5dbtH (H:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtH (H:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >5dbtI (I:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtI (I:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >5dbtJ (J:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtJ (J:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >5dbtK (K:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtK (K:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5dbtL (L:)
gshmklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkv
ctvigfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasg
dklvkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdm
gvkasggarsyedaiafieagasr

    Sequence, based on observed residues (ATOM records): (download) 
    >5dbtL (L:)
mklnkyidhtilkpettqeqvekilaeakeydfasvcvnptwvalaaeslkdsdvkvctv
igfplgantpavkafetkdaisngadeidmvinigalktgnydlvledikavvaasgdkl
vkviieaclltddekvkacqlsqeagadyvktstgfstggatvadvalmrktvgpdmgvk
asggarsyedaiafieagasr