PDB entry 4ygo

View 4ygo on RCSB PDB site
Description: Dodecameric structure of spermidine N-acetyltransferase from Vibrio cholerae in intermediate state
Class: transferase
Keywords: SpeG, Structural Genomics, CSGID, Center for Structural Genomics of Infectious Diseases, TRANSFERASE
Deposited on 2015-02-26, released 2015-10-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygoa_
  • Chain 'B':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygob_
  • Chain 'C':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygoc_
  • Chain 'D':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygod_
  • Chain 'E':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygoe_
  • Chain 'F':
    Compound: Spermidine n1-acetyltransferase
    Species: Vibrio cholerae serotype O1 (ATCC 39315 / El Tor Inaba N16961) [TaxId:243277]
    Gene: VC_A0947
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ygof_
  • Heterogens: CA, MOH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ygoA (A:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoA (A:)
nsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvve
daqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiyl
hvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskyln

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ygoB (B:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoB (B:)
nsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvve
daqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiyl
hvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskyln

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ygoC (C:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoC (C:)
nsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvve
daqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiyl
hvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ygoD (D:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoD (D:)
nsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvve
daqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiyl
hvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ygoE (E:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoE (E:)
qltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvveda
qknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiylhv
avenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskyln

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ygoF (F:)
mnsqltlralergdlrfihnlnnnrnimsywfeepyesfdeleelynkhihdnaerrfvv
edaqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiy
lhvavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygoF (F:)
nsqltlralergdlrfihnlnnnrimsywfeepyesfdeleelynkhihdnaerrfvved
aqknliglvelieinyihrsaefqiiiapehqgkgfartlinraldysftilnlhkiylh
vavenpkavhlyeecgfveeghlveeffingryqdvkrmyilqskylnrse